Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22350 607 / 0 ELM1 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) AT5G06180 477 / 5e-168 Protein of unknown function (DUF1022) (.1), Protein of unknown function (DUF1022) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159900 [exp] 731 / 0 AT5G22350 629 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Potri.016G075500 [exp] 555 / 0 AT5G22350 569 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005191 [exp] 650 / 0 AT5G22350 626 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Lus10013300 [exp] 646 / 0 AT5G22350 626 / 0.0 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1) Lus10017009 [exp] 287 / 2e-86 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021334 [exp] 163 / 1e-47 AT5G22350 275 / 4e-91 ELONGATED MITOCHONDRIA 1, Protein of unknown function (DUF1022) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF06258 [poplar] [flax] Mito_fiss_Elm1 Mitochondrial fission ELM1
Representative CDS sequence Show only first row Show all	>Potri.004G197000.2 pacid=42795614 polypeptide=Potri.004G197000.2.p locus=Potri.004G197000 ID=Potri.004G197000.2.v4.1 annot-version=v4.1 ATGAAGCCAATAAGGCTACCGGAACCCCCGAGTCCCACCATGGGAGTACCGGAGATCTTCGAAAACGGCGCGTACAGTGTCATTCGCCGTGCCGTCGTCA TCGGCAACGGATTTCCCGGTTCAGAAAACCAGAGCCTCGGCTTAGTTCGTGCTCTTGGCCTCTATGATAAGCACGTCTTATTTAGAGTGACGAGACCAAG AGGAGGCATAAATGAGTGGTTGCATTGGCTACCGATTTCTCTCCACAAGTTGTTGTACTACATCATAAGGCGGATATATAGTTATTTGCGGTTAATAGCG TCGCGGCGGAGGAGACTTTCACCTCTGCCGTCGGAGAAAGGTCGCAATGTGGGCTTGTCGTCAATTTTAGAAGCTGATTCGAAGCGGATTGTGAATATGG CACGAGAAAGTTATGAGAAGGATGGCCCTTTATTGGTAGTTGCATCTGGAAGAGATACAATTTCTGTTGCAAGCTCTATAAAACGTTTAGCATCAGAAAA AGTTTTCCTTGTTCAGATTCAACATCCAAGGTCAGACTTGAGTAGGTTTGACTTGGTTGTCACACCTCATCACGATTATTATCCTTTGACTCCCCAAGCA CAAGAACAAGTTCCTCGATTTCTTCAGAGGTGGATAACTCCACGCGAACCTCCTGATGAGCATGTGGTTCTTACCGTGGGAGCCTTACATCAAATTGATT TTGCTGCGTTACGCAGTGCAGCTAGTACATGGCATGACGAGTTTGCACCTTTGCCAAAGCCTTTGCTGGTGGTTAACATTGGAGGGCCTTCATGTCACTG TCGTTATGGAACGGACCTAGCGAAGCAGTTATGTACCTTTGTGACTAACGTGCTTGTGAGCTGCGGGAGTGTCAGAATATTTTTCTCAAATAGGACACCT GAGAAGGTTTCAAACATAATAATCAAAGAACTTGCAAATAATCCAAAAGTTTACATCTGGGATGGTGAAGAGCCAAATCCATATATGGGACATTTAGCTT GGGGAGACGCATTTGTTGTCACAGCAGATTCAGTCAGTATGATAAGTGAGGCTTGCAGTACTGGGAAACCTGTTTATGTGATGGGATCTGAACGTTGCAC ATGGAAGTTGGCTGACTTCCATAAATCTTTGAGTGAGCGAGGAGTGGTTCGACCATTTACAGGATCTGAGGATATTTCAGAAAGCTGGAGCTACCCACCT CTAAATGACACTGCTGAAGTTGCTCGTCGAGTTCATGAAGTGCTTGCTGAAAGAGGATTGAGAGTGCGGCCATAA
AA sequence Show only first row Show all	>Potri.004G197000.2 pacid=42795614 polypeptide=Potri.004G197000.2.p locus=Potri.004G197000 ID=Potri.004G197000.2.v4.1 annot-version=v4.1 MKPIRLPEPPSPTMGVPEIFENGAYSVIRRAVVIGNGFPGSENQSLGLVRALGLYDKHVLFRVTRPRGGINEWLHWLPISLHKLLYYIIRRIYSYLRLIA SRRRRLSPLPSEKGRNVGLSSILEADSKRIVNMARESYEKDGPLLVVASGRDTISVASSIKRLASEKVFLVQIQHPRSDLSRFDLVVTPHHDYYPLTPQA QEQVPRFLQRWITPREPPDEHVVLTVGALHQIDFAALRSAASTWHDEFAPLPKPLLVVNIGGPSCHCRYGTDLAKQLCTFVTNVLVSCGSVRIFFSNRTP EKVSNIIIKELANNPKVYIWDGEEPNPYMGHLAWGDAFVVTADSVSMISEACSTGKPVYVMGSERCTWKLADFHKSLSERGVVRPFTGSEDISESWSYPP LNDTAEVARRVHEVLAERGLRVRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.004G197000 [exp]	0	1
AT4G38090			Ribosomal protein S5 domain 2-...		Potri.007G010400 [exp]	2.82	0.8388
AT5G17610			unknown protein		Potri.013G073100 [exp]	4.24	0.8256
AT4G16360			5'-AMP-activated protein kinas...		Potri.014G167400 [exp]	4.47	0.8173
AT3G59670			unknown protein		Potri.005G144800 [exp]	4.47	0.8297
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.014G089300 [exp]	5.29	0.8205
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	6.32	0.8073	Pt-HDA9.2,HDA904
AT1G18440			Peptidyl-tRNA hydrolase family...		Potri.012G061100 [exp]	9.38	0.7965
AT1G01730			unknown protein		Potri.015G145000 [exp]	11.48	0.8120
AT5G18810		SCL28, At-SCL28	SC35-like splicing factor 28 (...		Potri.008G196700 [exp]	12.64	0.7853
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.015G005000 [exp]	13.41	0.7952

Compare expression of checked genes

Potri.004G197000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.