Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34570 297 / 3e-101 MEE21 maternal effect embryo arrest 21, PIN domain-like family protein (.1) AT2G46230 61 / 4e-11 PIN domain-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159400 [exp] 299 / 3e-103 AT2G34570 210 / 2e-68 maternal effect embryo arrest 21, PIN domain-like family protein (.1) Potri.014G092600 [exp] 63 / 9e-12 AT2G46230 318 / 2e-112 PIN domain-like family protein (.1.2) Potri.002G166200 [exp] 63 / 9e-12 AT2G46230 332 / 9e-118 PIN domain-like family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001157 [exp] 316 / 3e-108 AT2G34570 251 / 7e-83 maternal effect embryo arrest 21, PIN domain-like family protein (.1) Lus10012649 [exp] 61 / 8e-11 AT2G46230 332 / 6e-117 PIN domain-like family protein (.1.2) Lus10010134 [exp] 60 / 4e-10 AT2G46230 335 / 3e-117 PIN domain-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF04900 [poplar] [flax] Fcf1 Fcf1
Representative CDS sequence Show only first row Show all	>Potri.004G197200.1 pacid=42795201 polypeptide=Potri.004G197200.1.p locus=Potri.004G197200 ID=Potri.004G197200.1.v4.1 annot-version=v4.1 ATGAGAGTAAAGAAGCAGAAACGCCACCGGCGGGCAGTGAGATTTTACACAGCATGTTTTGGGTTCCGTCAGCCGTACAAAGTCTTATGCGACGGCACAT TTATTCACCATTTAATAGTTAATAACATTGCTCCTGCTGATACAGCTATTTCTAACATTCTTGGTGGCTCTGTCAAGCTCTTCACCACCAGGTGTGTTTT GGCAGAGCTGAAAAGACTTGGGAAATCTTACACTGAATCTCTTCAGGCAGCTAATACGCTTATGATTGCAAGGTGTGATCATGAACAAATCAAGAATGCA GAGGGTTGCATTGTGGAGATTATTGGAGAAAATAACCCGGACCACTTCTATGTTGGTACTCAGGATACTGACATGCGGAAGAAGTTTCAGGAGGTGCCAG GTGTCCCTCTCATATTTGGTCTGAGAAATGCCCTCTTTCTTCAGCCACCATCTGCATTTCAGCGGCAGTTTGCCAAAAATTCAGAAGAAGAACGGTCACA TATGACCGAGAAAGAAGTCGCACTCTTAAAAAAGAGGACTAAGGACTTAGTGGAAAATTGGGAAATTGGAGATTCTTCTGATGAAAATGGAGGTCCAGAA GATGAAAATTTGGAAATGCAGCCTCAGAAATATTCTTCTAGAAAGGGAATGAAGGTCAAGGATAGACCTCAATTCAAGAGAAACAAAGCTAAGGGTCCAA ATCCACTTTCAGTCCAGAAGAAAAAGAGTCGTCAAAACACAAACTCCATGTCAGGGAAGGAAAGCAAAGGTGGTGATGAGACAGTGAGAAGTAGAGGCAG GAAAAGAAAGAGATCACGCAAAGGCAAAAGTTCTGCTCCAGCAGAAAGCTAA
AA sequence Show only first row Show all	>Potri.004G197200.1 pacid=42795201 polypeptide=Potri.004G197200.1.p locus=Potri.004G197200 ID=Potri.004G197200.1.v4.1 annot-version=v4.1 MRVKKQKRHRRAVRFYTACFGFRQPYKVLCDGTFIHHLIVNNIAPADTAISNILGGSVKLFTTRCVLAELKRLGKSYTESLQAANTLMIARCDHEQIKNA EGCIVEIIGENNPDHFYVGTQDTDMRKKFQEVPGVPLIFGLRNALFLQPPSAFQRQFAKNSEEERSHMTEKEVALLKKRTKDLVENWEIGDSSDENGGPE DENLEMQPQKYSSRKGMKVKDRPQFKRNKAKGPNPLSVQKKKSRQNTNSMSGKESKGGDETVRSRGRKRKRSRKGKSSAPAES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34570		MEE21	maternal effect embryo arrest ...		Potri.004G197200 [exp]	0	1
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	2.23	0.8654
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.003G158800 [exp]	2.23	0.8124
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.001G024500 [exp]	4.89	0.8071	Pt-IMP4.1
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.016G043800 [exp]	5.83	0.7725	EIF3.3
AT5G15550			Transducin/WD40 repeat-like su...		Potri.017G093300 [exp]	7.48	0.8154
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	7.54	0.8309
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.006G157400 [exp]	9.48	0.7963
AT3G02220			unknown protein		Potri.004G116800 [exp]	12.48	0.7454
AT5G23300		PYRD	pyrimidine d (.1)		Potri.005G089700 [exp]	13.41	0.7915
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.015G001900 [exp]	14.83	0.7507

Compare expression of checked genes

Potri.004G197200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.