Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EIN3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20770 724 / 0 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) AT2G27050 669 / 0 EIL AtEIL1, EIL1 ETHYLENE-INSENSITIVE3-like 1 (.1) AT1G73730 387 / 2e-127 EIL AtEIL3, ATSLIM, SLIM1, EIL3 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) AT5G21120 344 / 1e-111 EIL EIL2 ETHYLENE-INSENSITIVE3-like 2 (.1) AT5G10120 331 / 5e-107 EIL Ethylene insensitive 3 family protein (.1) AT5G65100 316 / 3e-100 EIL Ethylene insensitive 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159200 [exp] 1091 / 0 AT3G20770 704 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.008G011300 [exp] 666 / 0 AT3G20770 560 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.010G247500 [exp] 659 / 0 AT3G20770 578 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.001G015900 [exp] 396 / 1e-130 AT1G73730 494 / 8e-170 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.003G210500 [exp] 386 / 9e-127 AT1G73730 516 / 5e-178 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.001G015966 [exp] 184 / 4e-54 AT1G73730 239 / 6e-76 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031817 [exp] 387 / 2e-127 AT1G73730 555 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10031245 [exp] 369 / 2e-120 AT1G73730 556 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10014331 [exp] 319 / 3e-102 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1) Lus10041709 [exp] 308 / 7e-98 AT5G65100 358 / 6e-119 Ethylene insensitive 3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04873 [poplar] [flax] EIN3 Ethylene insensitive 3
Representative CDS sequence Show only first row Show all	>Potri.004G197400.1 pacid=42796757 polypeptide=Potri.004G197400.1.p locus=Potri.004G197400 ID=Potri.004G197400.1.v4.1 annot-version=v4.1 ATGATGTCGATGTTTGATGAGACGGGGTTTTGTGGTGACATGGATTTCTTCTGTACCCCTCTCGTGGAAGGAGATGTGAGTGCTCCACAGGTAGAACCTG AGGTTACTGTGGAGGATGATTATAGTGATGAGGAGATTGATGTTGATGAGCTTGAGCGAAGGATGTGGAGGGACAAAATGCGTCTCAAAAGGCTAAAAGA GCAGACCAGAAGCAAGGAGGGGATTGATATTGCTAAGCAGCGTCAGTCCCAGGAGCAGGCCAGGAGGAAGAAGATGTCCAGGGCACAAGATGGGATCTTA AAGTACATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGTTTTGTTTACGGGATTATCCCAGAGAAGGGAAAGCCAGTGACTGGTGCATCTGATAATC TTAGAGAATGGTGGAAGGATAAAGTCAGGTTTGATCGAAATGGTCCAGCTGCCATAGCTAAGTACCAAGCAGATAACTCGATCCCTGGAAAGGATGAGGG CTGTCATTCAATTGGCCCAACCCCACACACCTTGCAGGAGCTTCAAGATACCACCCTTGGCTCGCTCTTATCTGCATTGATGCAGCACTGTGACCCTCCC CAGAGGCGGTTTCCATTAGAGAAAGGTGTTCCTCCACCATGGTGGCCTTCTGGAGATGAAGAATGGTGGCCACAACTGGGTTTGCCCAAAGACCATGGCC CCCCACCTTACAAGAAGCCTCATGACTTGAAGAAGGCATGGAAGGTGGGTGTTCTCACAGCAGTGATTAAGCATATGTCCCCTGATATTGCCAAGATCCG CAAGCTTGTGAGGCAATCCAAGTGCTTGCAGGACAAGATGACAGCCAAGGAAAGTGCTACTTGGCTTGCAATTATCAACCAAGAGGAATCATTGGCTCGT GAGCTTTACCCGAATTCCTGTCCACCATTGTCTTCATCCGGAGGGAGTGGATCTTTGGTCGTTAATGATTCCAGTGAGTATGATGTTGAAGGAGCTGAAG ATGAGTCAAACTTTGATGTGCAAGAGTGCAAACCCGAGACTCTCAGCTATTCTAATCTAGGGATGGAAAGAATGGGTGAAAGGCTACCTCTTCGACAACA ACCTTATCCAATCAAGGGAGAAGTTATCACCAGCACGGATTTTATTAGAAAGAGAAAGCCATCCAGTGATATAAACATGATGGCGGATCAGAAGATCTAC ACATGCGAGGCTGTTCAATGTGCTCATAGTCAAATCCGATTGGGTTTCCCCGACAGGGCTTCTAGGGACAATCATCAACTAAATTGTCCATACAGAAGCA CTTCATTGGAGTTTAGAGGGTCAAATTTTCATGTTAATGAAGTCAAGCCTGTCATCTATCCTCAACCATCTGCACAGTCCAAGACAACTGCTCCATTGGT GAACCCAGCACCCTCTTCCTTCAATCTATCAGGAGTTCCTGAAGATGGGCAAAAGATGATCAGTGAGCTTATGTCAATCTATGACACTAATATTCAAGGC AACAAGAACACAAATCGTGGTAACAATTTGGTCACAGAAGGTCACAATGTTTTCCAGCCAAAAATCCAACACCAGCAGGACAACCACTTCCGAAGTCAAA GCAATATGATTAACGGAAGTATCTTCGAAGGGTCCAACATCAACCAAAACCATCAAATGTTTTCCCAGGAAGGTGGTCAGTTTGACAGGTTCAAACCCTT GAATTCTCCGTTCGAGACCAACCAAAACAACAGCGGCTTCAACTTGATGTTCGGCTCCCCCTTTGATTTGTCCTCTTTCGACTACAAAGATGATCTACAA GTACTGGGAATGGATACTCTGCCAAAGCATCAGGATGTTTCAACCTGGTTCTAA
AA sequence Show only first row Show all	>Potri.004G197400.1 pacid=42796757 polypeptide=Potri.004G197400.1.p locus=Potri.004G197400 ID=Potri.004G197400.1.v4.1 annot-version=v4.1 MMSMFDETGFCGDMDFFCTPLVEGDVSAPQVEPEVTVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQTRSKEGIDIAKQRQSQEQARRKKMSRAQDGIL KYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSIPGKDEGCHSIGPTPHTLQELQDTTLGSLLSALMQHCDPP QRRFPLEKGVPPPWWPSGDEEWWPQLGLPKDHGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEESLAR ELYPNSCPPLSSSGGSGSLVVNDSSEYDVEGAEDESNFDVQECKPETLSYSNLGMERMGERLPLRQQPYPIKGEVITSTDFIRKRKPSSDINMMADQKIY TCEAVQCAHSQIRLGFPDRASRDNHQLNCPYRSTSLEFRGSNFHVNEVKPVIYPQPSAQSKTTAPLVNPAPSSFNLSGVPEDGQKMISELMSIYDTNIQG NKNTNRGNNLVTEGHNVFQPKIQHQQDNHFRSQSNMINGSIFEGSNINQNHQMFSQEGGQFDRFKPLNSPFETNQNNSGFNLMFGSPFDLSSFDYKDDLQ VLGMDTLPKHQDVSTWF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	0	1	Pt-EIN3.1
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	3.00	0.8523
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	3.46	0.8338
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	4.00	0.8177
AT2G24360			Protein kinase superfamily pro...		Potri.018G001900 [exp]	6.32	0.8137
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	6.92	0.8024	Pt-SCL1.2
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.002G068700 [exp]	8.36	0.8068
AT2G39130			Transmembrane amino acid trans...		Potri.010G226000 [exp]	9.16	0.7894
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	10.09	0.8429
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	10.09	0.7741
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	12.96	0.8198

Compare expression of checked genes

Potri.004G197400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.