Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27060 1054 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G20940 432 / 3e-135 Leucine-rich receptor-like protein kinase family protein (.1) AT5G10020 397 / 1e-121 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G34220 213 / 7e-58 Leucine-rich repeat protein kinase family protein (.1) AT3G51740 207 / 3e-55 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G15300 198 / 9e-53 Leucine-rich repeat protein kinase family protein (.1) AT5G62230 188 / 7e-49 ERL1 ERECTA-like 1 (.1.2) AT1G17230 181 / 2e-46 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 180 / 5e-46 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT4G36180 178 / 2e-45 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083000 [exp] 744 / 0 AT5G10020 1140 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G163700 [exp] 720 / 0 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G465800 [exp] 718 / 0 AT4G20940 915 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G082800 [exp] 718 / 0 AT5G10020 1132 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G159101 [exp] 369 / 9e-122 AT2G27060 214 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 222 / 3e-60 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.016G126300 [exp] 217 / 9e-59 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 210 / 3e-56 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.018G113000 [exp] 188 / 9e-49 AT5G51350 1014 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025541 [exp] 1142 / 0 AT2G27060 958 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026756 [exp] 1138 / 0 AT2G27060 961 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038544 [exp] 725 / 0 AT4G20940 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023260 [exp] 363 / 8e-110 AT4G20940 704 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012225 [exp] 212 / 2e-58 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022679 [exp] 207 / 7e-56 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 206 / 2e-55 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 204 / 2e-54 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 199 / 5e-53 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10019036 [exp] 191 / 1e-49 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G197500.1 pacid=42795530 polypeptide=Potri.004G197500.1.p locus=Potri.004G197500 ID=Potri.004G197500.1.v4.1 annot-version=v4.1 ATGCAAACGATCTGCCTGATTTTATTGTTGTTGGTAGTAGCTGCATTAGGACAATCTGATTTTAAAGCACTTTTGGAGCTCAGGAAGGGTTTTGAGAAAG ACCCATCAGGGAAAGTTTTTGACTCATGGGACAGCAAGTCCTTGGCATCTGATGGGTGCCCTCAGACCTGGTACGGGGTTATCTGTGTCAATGGTCATGT GGTTTCAATCACTCTAAATGATGTTGGTCTTGTTGGAAACTTCAGTTTCCCAGTTCTTGCTGGCTTTAAAATGCTTCGAAACTTGTCGGTTTCGAACAAC CAGTTGATGGGCACTATCTCGAATGTTGGTTCCATCGAGTCCCTTGAATTTCTGGATCTTTCATCCAATTTTTTTCATGGGTTTGTACCTTCTGGGGTGT CAAAGTTGAAGAATTTAGTGCTTCTGAATCTTTCTTCAAACAATTTTGAAGGCCTTGTTCCCTCAGGTTTTGGCAATCTCGAGAGCTTGGAGTACTTAGA TTTGAGGCATAATAGCTTTTCTGGGGATATAATGGGTCTTCTTTCCCAGTTGGACATTGTGGTTCATGTTGATTTGAGCAGCAACCAATTTTCTGGTTCA TTGGATTTGGGACTCGGAAATGCTAGCTTTGTTTCATCAATCAAGTATTTGAATGTAAGCCACAATTACTTGGTTGGGCAGCTCTTTGCTCACGATGGAG TGCCATATTTTGACAGCTTAGAGGTCTTTGATGTTAGCAATAATCAGATAACTGGGGCTATTCCCCCCTTCAAATTTGTTGTTTCTCTTCGGATTCTTAG GCTTGGTGGCAACCAGTTATCAGGGTCTTTACCAGAAGCTCTTCTGCAAGATAGCTCGATGGTGTTGACTGAACTGGATCTTAGCCTTAATCAACTTGAA GGTCCAGTAGGAAGTATCACCTCTACAACTCTGAGGAAGATGAATATATCTTCAAACAAACTTTCAGGCCCTTTACCAGCCACTGCAGGCCACTGTGCCA CCATTGATCTGAGTAATAATATGCTCACAGGGAATTTGTCCAGAATCCAGAACTGGGGAAATTACGTGGAAGTTATTCAGTTGAGTTCAAACTCATTGAC AGGAACTTTGCCTAACCAAACTTCTCAATTCTTGAGGCTAACTACATTGAAGATATCAAACAACTCATTGAATGGTGATCTTCCACCAGTGTTGGGTACA TACTCAGAACTAAAGGTGATTGATCTTAGCCTCAATTTTCTTACAGGGTTCCTCCTTCCAGATTTCTTCACCTCAACAACACTGACTGACCTCAACCTGT CAGCCAACAATTTCACAGGGGAAATACCTCTTCAGGAGGTCCACGACTCTAGAGAAAATTTGAGTTTGGTGTCTCTTGACCTGTCACACAACTCTTTAGA GGGATCTTTGCCCCCAGAAATCAGTAAGTTCCATAACCTGGTCTATCTTAACCTATCTAACAACAAACTGAAAGGCAGCATCCCTGGGGACCTTCCTGAC GGATTGAAAGGATTTGATGTGTCTTCTAACAATTTTTCTGGTGTGGTTCCTGATAACTTGAGGCGGTTTCCTGATTCAGCTTTCCATCCAGGAAATTCTT TGTTGATTTTTCCTTATTTTCCATCCTCATCAAAGGGGCCTCCAGCCCTTGTGAATTTGAAGGGGGGTCGATCTCGTATGAAACCTGCTATTAAAATTGC TCTGATTGCAAGTATGGTTGGTGCTGCTACTATAATAGCTCTTTTGTCCATGGTGATTTATTACCGCACCCATCGGCCGACACATGGTACCAGAAGTTTG AAAGGAGATGAGAGAAGTGAAGGTGTCCCACAGGAGGAGGGTTCTTCCATCTCTTCATCAAGAGTCAACAAAAATCCAAGCCAATCATCTGCATCACTTA GCTTCCACCAAAGTAACTCCCTAACCCAGATGGGGTCTGCATATGATCCAGGGAACACATCCTCAGTTCCACAGAAGTCTAAAGAGCATCTCGAATCAAT AACAAAAGATGGAGGGTTGACTTCTCCCCATCTGTCATCTTCAAATGCATCACCTTCTAAAAGCCCACTATCATCTGATACTCCTGGGGTGCTGAGAGTT AGATCTCCGGATAAGTTGGCTGGGAATTTGCATCTCTTTGATGGTTCTCTAACATTCACTGCAGAAGAACTTTCATGTGCTCCAGCAGAAGTTGTTGGAA GGAGTTGCCATGGCGCGCTATATAAAGCTACACTTGACTCTGGCTATGTAATGGCGATAAAGTGGTTAAAAGAGGGAATAGCAAAAGGGAAGAAGGATTT TGCTAGGGAAGTAAAGAAACTCGGGAGCATCAGACATCCAAATTTAGTTTCTCTTCAGGGTTACTACTGGGGTCCAAAAGACCATGAGAAGATGATAATA ACGAAATATATCAATGCGCAATGTTTGGCCTTCTATCTTCAAGAATCAGAGCCAAGGAAACTTCAGTCATTATCTCTTGATGATCGGCTGAGGATTGCTG TAAATGTCGCCTGGTGCCTAAACTACCTACACAATGAAAGAGCAATTCCCCATGGAAACCTAAAATCTACAAACATTTTGTTAGAACCCCCAAACATGAA TCCACTGCTCACTGATTACAGTCTCCATCGAATATTGACTTCTGCTGGCACAGCAGAACAAGTTCTGAATGCAGGTGCTCTTGGCTATCGGCCACCTGAA TTTGCTAGTTCAAGTAAACCCTGCCCATCATTGAAGAGTGATGTTTATGCATTTGGGGTTATCTTGTTAGAGCTCCTAACTGGAAAATGTTCATGGGAGA TAGTTTCTGCCGACCCAGGAGTGGTTGATCTGACAGACTGGGTAAGGTTATTGTCTGAAGAAAACCGCACCAGTGAGTGCTTTGACAAGCTGCTTATGGA TACCCCTAACGCAGAGGCCCCGAGAGTTCTCGATGAAATGCTCCAGGTGGCTCTTAGATGTATCCTACCAGCATCTGAAAGGCCCGACATGAAAACGGTA TTCGAAGATCTTTCAACAGTAGCATCATGA
AA sequence Show only first row Show all	>Potri.004G197500.1 pacid=42795530 polypeptide=Potri.004G197500.1.p locus=Potri.004G197500 ID=Potri.004G197500.1.v4.1 annot-version=v4.1 MQTICLILLLLVVAALGQSDFKALLELRKGFEKDPSGKVFDSWDSKSLASDGCPQTWYGVICVNGHVVSITLNDVGLVGNFSFPVLAGFKMLRNLSVSNN QLMGTISNVGSIESLEFLDLSSNFFHGFVPSGVSKLKNLVLLNLSSNNFEGLVPSGFGNLESLEYLDLRHNSFSGDIMGLLSQLDIVVHVDLSSNQFSGS LDLGLGNASFVSSIKYLNVSHNYLVGQLFAHDGVPYFDSLEVFDVSNNQITGAIPPFKFVVSLRILRLGGNQLSGSLPEALLQDSSMVLTELDLSLNQLE GPVGSITSTTLRKMNISSNKLSGPLPATAGHCATIDLSNNMLTGNLSRIQNWGNYVEVIQLSSNSLTGTLPNQTSQFLRLTTLKISNNSLNGDLPPVLGT YSELKVIDLSLNFLTGFLLPDFFTSTTLTDLNLSANNFTGEIPLQEVHDSRENLSLVSLDLSHNSLEGSLPPEISKFHNLVYLNLSNNKLKGSIPGDLPD GLKGFDVSSNNFSGVVPDNLRRFPDSAFHPGNSLLIFPYFPSSSKGPPALVNLKGGRSRMKPAIKIALIASMVGAATIIALLSMVIYYRTHRPTHGTRSL KGDERSEGVPQEEGSSISSSRVNKNPSQSSASLSFHQSNSLTQMGSAYDPGNTSSVPQKSKEHLESITKDGGLTSPHLSSSNASPSKSPLSSDTPGVLRV RSPDKLAGNLHLFDGSLTFTAEELSCAPAEVVGRSCHGALYKATLDSGYVMAIKWLKEGIAKGKKDFAREVKKLGSIRHPNLVSLQGYYWGPKDHEKMII TKYINAQCLAFYLQESEPRKLQSLSLDDRLRIAVNVAWCLNYLHNERAIPHGNLKSTNILLEPPNMNPLLTDYSLHRILTSAGTAEQVLNAGALGYRPPE FASSSKPCPSLKSDVYAFGVILLELLTGKCSWEIVSADPGVVDLTDWVRLLSEENRTSECFDKLLMDTPNAEAPRVLDEMLQVALRCILPASERPDMKTV FEDLSTVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27060			Leucine-rich repeat protein ki...		Potri.004G197500 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.016G086300 [exp]	1.41	0.9350
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	1.73	0.9389
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.011G067400 [exp]	5.19	0.9296
AT1G48780			unknown protein		Potri.015G045700 [exp]	5.29	0.9256
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Potri.011G068500 [exp]	9.79	0.9083
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.003G143200 [exp]	13.03	0.9097
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	13.07	0.9118
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	13.41	0.9159
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.003G132000 [exp]	15.23	0.9132
AT1G05170			Galactosyltransferase family p...		Potri.014G153700 [exp]	15.55	0.9001

Compare expression of checked genes

Potri.004G197500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.