Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 208 / 2e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 119 / 2e-32 NHL25 NDR1/HIN1-like 25 (.1) AT1G65690 117 / 1e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G54540 103 / 2e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G22180 71 / 3e-14 hydroxyproline-rich glycoprotein family protein (.1) AT5G22870 69 / 5e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 69 / 2e-13 NHL2 NDR1/HIN1-like 2 (.1) AT5G22200 67 / 2e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 66 / 1e-12 NHL3 NDR1/HIN1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G158900 [exp] 384 / 1e-135 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.015G148200 [exp] 116 / 6e-31 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.017G154000 [exp] 115 / 1e-30 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G166600 [exp] 112 / 2e-29 AT2G27080 114 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.012G145500 [exp] 111 / 4e-29 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.004G067100 [exp] 105 / 5e-27 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.013G135800 [exp] 96 / 1e-23 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 80 / 1e-17 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G077100 [exp] 75 / 2e-15 AT2G22180 111 / 8e-29 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026762 [exp] 125 / 4e-36 AT2G27080 110 / 5e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10025548 [exp] 124 / 1e-35 AT2G27080 107 / 1e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10007364 [exp] 117 / 3e-31 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 111 / 4e-29 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031888 [exp] 109 / 1e-28 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 106 / 4e-27 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10033705 [exp] 84 / 1e-18 AT1G65690 114 / 1e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031635 [exp] 80 / 2e-17 AT1G65690 101 / 9e-26 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10019667 [exp] 74 / 5e-15 AT2G22180 102 / 3e-25 hydroxyproline-rich glycoprotein family protein (.1) Lus10000688 [exp] 67 / 1e-12 AT2G22180 98 / 1e-23 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.004G197600.1 pacid=42796644 polypeptide=Potri.004G197600.1.p locus=Potri.004G197600 ID=Potri.004G197600.1.v4.1 annot-version=v4.1 ATGGCCGACAGAGTTCATCCCCGAGACGACTCACCACCACAAACCACCGAATTCAAACCTCCTCCCGCAGCAGCACATTATCCAGAGTCACCAACAAAAC CCGATGCTCCTCGGTCAGAGAAACCGGTCCCACCGCCACCAGGAACTTACGTCATCCAAATCCCCAAAGATCAAGTCTACCGAGTCCCACCACCGGAAAA TGCTAAACGCCACGAACGTCTCACCCGCCGCAAGCCTAGCCGTAGCCCCTGCTGCTGCTGCCTCTGCTGGCTCCTTGCACTTCTCACCGCCTTAATCTTC CTCGTTGGCGTCGCTGCTGCTGTGTTCTATTTTGTGTTCCGCCCGGAGTCACCGGATTATTCAGTCGAGCGTTTGTCGATTTCGGGGTTTAATCTGACGT CATCAAGATGGGTCTCTCCGGAATTTGACGTCACTGTGAGAGCGAATAACCCTAACGATAAAATTGGGATTTATTATAGAAGAGGAAGTTCCGTTGATGT TTACTATGACAGCGTTAAATTGGCCACGGGATCGTTACCGATTTTCTACCAAGGGACAAACAATGTGACTGTGTTTGTAACGCCGTTAAAGGGATCTGCC GTTGAGTTGACGAGCGGGGATCGTACGGCGATGATCGATGAGGTTGGCAAAGGACAGGTGCCGTTTAAGCTGGCTTTGAGGGCTCCGGTTAAGATTAAGG TTGGTTCTGTTGAGACATGGGAGATTACTGTTAAAGTTGACTGTGATTTAACGGTGGATAAACTAACGGCAACTGCAGAGATTGGGTCTAAAAAATGTGA TTATGGTGTGGATTTGTGGTAG
AA sequence Show only first row Show all	>Potri.004G197600.1 pacid=42796644 polypeptide=Potri.004G197600.1.p locus=Potri.004G197600 ID=Potri.004G197600.1.v4.1 annot-version=v4.1 MADRVHPRDDSPPQTTEFKPPPAAAHYPESPTKPDAPRSEKPVPPPPGTYVIQIPKDQVYRVPPPENAKRHERLTRRKPSRSPCCCCLCWLLALLTALIF LVGVAAAVFYFVFRPESPDYSVERLSISGFNLTSSRWVSPEFDVTVRANNPNDKIGIYYRRGSSVDVYYDSVKLATGSLPIFYQGTNNVTVFVTPLKGSA VELTSGDRTAMIDEVGKGQVPFKLALRAPVKIKVGSVETWEITVKVDCDLTVDKLTATAEIGSKKCDYGVDLW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	0	1
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	1.41	0.9279
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.007G104300 [exp]	2.82	0.9103
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	2.82	0.8824
AT1G45688			unknown protein		Potri.014G026800 [exp]	3.60	0.8681
AT3G24630			unknown protein		Potri.018G082300 [exp]	3.87	0.8926
AT5G57510			unknown protein		Potri.006G273500 [exp]	4.47	0.8733
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	4.47	0.8934
AT2G27080			Late embryogenesis abundant (L...		Potri.009G158900 [exp]	5.19	0.9070
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	5.19	0.8788	ATSEB1.1
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.004G175500 [exp]	8.00	0.8424

Compare expression of checked genes

Potri.004G197600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.