Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27090 804 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 280 / 7e-84 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 172 / 1e-44 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 171 / 7e-44 Protein of unknown function (DUF630 and DUF632) (.1) AT2G19090 161 / 5e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT4G30130 160 / 7e-41 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 153 / 2e-38 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 151 / 7e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 139 / 7e-34 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G20530 134 / 1e-32 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G159000 [exp] 1206 / 0 AT2G27090 746 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.007G090300 [exp] 317 / 7e-97 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G077700 [exp] 308 / 2e-93 AT4G39790 546 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 217 / 2e-60 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 211 / 3e-58 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G077000 [exp] 184 / 9e-49 AT2G19090 664 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 179 / 6e-47 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 173 / 1e-44 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 171 / 3e-44 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025550 [exp] 846 / 0 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 761 / 0 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 308 / 1e-93 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 305 / 1e-92 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 201 / 2e-54 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025077 [exp] 199 / 8e-54 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10023949 [exp] 191 / 9e-52 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 191 / 5e-51 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10042722 [exp] 171 / 1e-44 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 170 / 6e-44 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.004G197700.1 pacid=42795043 polypeptide=Potri.004G197700.1.p locus=Potri.004G197700 ID=Potri.004G197700.1.v4.1 annot-version=v4.1 ATGGGTGCTTCAAGTTCTAAAATAGAAGAAGACAAGGCTTTGCAGCTTTGTCGTGAAAGAAGGAAATTTGTTAGGCAAGCCCTTGATGGCCGGTGCTCGC TTGCAGCAGCTCATGTTACGTATATTCAGTCACTGGGAAGTACAGGAACTGCTCTTAGGAAGTTTGTTGAACCTGAAGTTCCTATTGAATCTTCGTTGTA CATCTCCACCAATGCAACGCCAGAGCCACCTGCTTTGACTGAGAAGTCGCTTTCCCATTTTTCAGTCTCCTCTCAATCTTTATCTCACCCTGTTGATGCA GCTGAAAACTTTTCTCCATCACCATCTCCTCCCAGCTCAAGTCAGGTTCAGGCACATCATATGAAATTTAGGGGCTTTTCTTCTAAAACAATTGAAGAGA AACCACCTGTAGTTGTTACAGGGACAGTAACGTCATCCAGTACCCCACAAAATACCACTCCTCGTTCCACTGAGAAACATGAAACATCACAGTTTGATGA TTCATCAGTACCACCAGGGACGACTCAATGGGATTACTTCGAACCTTTTCAACCAATTGACCATCAGTTTTCTTTTCAAGACAGAATGCAACTGAACCAT GGGTTCGACAGTGCTGATGATTTAAGACAGCTCAGGGAAGAGTATGGAATTCCTGATCTGGAAGACGAAGGAGAGAAAGCTTCGTTTCATGAAATTGCAG AATCTGAGGGTTCGGAAGATGAATTTGATGACCCTCCTGTGGATACTTTGGTGCGAAGTTTTGAAAATCTTAATAGGGTACATGATCATGTTGCACCTAG TGCCTCACAAATCACGCCTTCTGCAAGTGGTGCAGCTTCAGATACTGAGCTATTGAATGGGAAGAAAGGGAACTCTCCTGGTTTGTTGCCATTAAGAACA CCATCAGCAGCAGTTTCTGTTTCAGCTGACAGACAGAAAACACCGATGAAGGAAGATCAATCAAAAAATAAGGTTTCCCCTAAGGACTTCTTTTCAAGCA TAAAAGATATAGAGTATCTCTTTGTAAAAGCTTCTGATTCTGGGAAAGAGGTTCCGAGGATGCTTGAAGCAAATAAATTGCATTTCCGTCCAGTGGTACC TGGAAAAGAAAATGGATCAGTGGCATCTACATTCTTCAAGGCCTGTTTATCTTGCGGGGAAGACCCTAGCCAAGTGCAAGAAGAGCCTGCCCAAAACGAT TTGAAGTACTTACCTTGGCATAGGACGACATCTTCGCGATCATCTTCATCCAGGACTCCTCTTGGATTAAACGCCAAGGATGATTCAGGTGATCCAGTTG GTAATCTTTTTGATAATTTTTGCATGATCTCTGGCAGTCATGCTTCAACTCTAGACAGACTATATGCATGGGAGAGGAAGCTGTATGAGGAAGTAAAGGC TAGTGAGATGGTCAGAAGGGAGTATGATATGAACTGTAAAGTTTTAAGACAACTGGAATCAAATGGAAAAAGTCTCCACAATGTGAAAATTGATAAAACC CGGGCCATTGTTAAAGATCTACACTCGAGAATCAGAGTTGCACTTCACAGAATTGATTCCATATCGAAGAGGATTGAGGAATTAAGAGACAAAGAGCTCC AGCCACAACTTGAGGAATTAATAGATGGGCTGAGTCGGATGTGGGAGGTGATGTTTGAATGCCACAAGCTTCAGTTTAACATCATTACAACAGCATACAA CAATTGCAATGCCGAGTTATCTATACAGTCAGAGTCACATCGGCAGGTTACTGTTCATCTTGAAAAAGAACTGAGCTCTCTATCTTCAAGTTTTACTAAG TGGATTGGAGCTCAGATTTCCTACCTGCAGGCTATAAATAGTTGGCTTTTTAAATGTGTCTTTTTTCCAAGCAAACCTGCCAAGAGAAAAAGGAGGCAAC CGGAACCATCAACGACTTTAAGATACTTTGGCCCTCCTGTATATGTCACCTGTGGTGTCTGGTTGGACAAACTTCAGACCTTGCCTGCAAAGGAAGTCGC AGAATCTATTAAGGGTTTAGCAGCTGAAACTGCTCGCTTTTTACCACGCCAAGAGAAGAACCAAGGGAAGAATGCGAACCTTTCATCATGGAAGGCTGAT AATGGCAGTGATTCAGCAGTTAACATGTTGAGAGATGAAGCACTGGAGGATTGTATCCTAGGTTTCAAGCATTTTCGATCAAGCCTGGAGGGATTTCTGG GTCAGTTGCATAAGTTTGCTGAGGATTCTGTCAAGATGTATGCAGAACTTGAAAAGGAAATCCAGGATACCAAGAGTAATTATGAAAGAGTGAAGTCCCA ACAGCAAGTTGCTTAA
AA sequence Show only first row Show all	>Potri.004G197700.1 pacid=42795043 polypeptide=Potri.004G197700.1.p locus=Potri.004G197700 ID=Potri.004G197700.1.v4.1 annot-version=v4.1 MGASSSKIEEDKALQLCRERRKFVRQALDGRCSLAAAHVTYIQSLGSTGTALRKFVEPEVPIESSLYISTNATPEPPALTEKSLSHFSVSSQSLSHPVDA AENFSPSPSPPSSSQVQAHHMKFRGFSSKTIEEKPPVVVTGTVTSSSTPQNTTPRSTEKHETSQFDDSSVPPGTTQWDYFEPFQPIDHQFSFQDRMQLNH GFDSADDLRQLREEYGIPDLEDEGEKASFHEIAESEGSEDEFDDPPVDTLVRSFENLNRVHDHVAPSASQITPSASGAASDTELLNGKKGNSPGLLPLRT PSAAVSVSADRQKTPMKEDQSKNKVSPKDFFSSIKDIEYLFVKASDSGKEVPRMLEANKLHFRPVVPGKENGSVASTFFKACLSCGEDPSQVQEEPAQND LKYLPWHRTTSSRSSSSRTPLGLNAKDDSGDPVGNLFDNFCMISGSHASTLDRLYAWERKLYEEVKASEMVRREYDMNCKVLRQLESNGKSLHNVKIDKT RAIVKDLHSRIRVALHRIDSISKRIEELRDKELQPQLEELIDGLSRMWEVMFECHKLQFNIITTAYNNCNAELSIQSESHRQVTVHLEKELSSLSSSFTK WIGAQISYLQAINSWLFKCVFFPSKPAKRKRRQPEPSTTLRYFGPPVYVTCGVWLDKLQTLPAKEVAESIKGLAAETARFLPRQEKNQGKNANLSSWKAD NGSDSAVNMLRDEALEDCILGFKHFRSSLEGFLGQLHKFAEDSVKMYAELEKEIQDTKSNYERVKSQQQVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27090			Protein of unknown function (D...		Potri.004G197700 [exp]	0	1
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	9.16	0.8322
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.002G199600 [exp]	18.49	0.7869
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	20.27	0.8137	SAUR5
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.002G062700 [exp]	24.81	0.7836	PAB3.1
AT1G67410			Exostosin family protein (.1)		Potri.008G034500 [exp]	25.69	0.7945
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	27.42	0.8085
AT1G09160			Protein phosphatase 2C family ...		Potri.013G011600 [exp]	38.57	0.7808
AT1G69980			unknown protein		Potri.008G191700 [exp]	42.04	0.7513
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	43.26	0.7825
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.018G055001 [exp]	46.90	0.7861

Compare expression of checked genes

Potri.004G197700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.