Plant FIBer expression Database

Potri.004G198200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44330 820 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G160400
[exp]
1009 / 0 AT3G44330 805 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005197
[exp]
788 / 0 AT3G44330 766 / 0.0 unknown protein
Lus10013307
[exp]
768 / 0 AT3G44330 743 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF05450 Nicastrin Nicastrin
Representative CDS sequence
>Potri.004G198200.2 pacid=42794908 polypeptide=Potri.004G198200.2.p locus=Potri.004G198200 ID=Potri.004G198200.2.v4.1 annot-version=v4.1
ATGTCGTCAAGGAAACAGCGAGAGCGTCAAATGCTAGAATCAATCTACTCAATGATCGCTCTCGTCTTCATCCTTGTCACCTGCATCGAGCTATGTGACG
CAGCAACTGTCGTCGACGTCTACCGCTTAATCCAATACGATATCTCCGGAGCTCAGTTCGGATCGCGTTTTGCCACTTTGAACCACCACGCCGGCTCCTT
GCATCTCCCTCCCGGCGTCGATCTTTCTCGCACTGTCGTCATCATTCCTGTTCGTGAATTGAATATCACTTTGGTTAAAGAGTTTATTGCACAAAGAAAA
CCGCTGGGAGGATTATTATTTTTGCTGCCGCAAATGCTTAATTTTGAAAATAGAGACCCCACGTCTGAGAGCAAGTATCAAATACATGAGAAGAAGTTGA
CAAAGAATGTTTTGGTGGAGCTTGAACGATTGCTTATTTATGCCAATATTCCCTATCCGGTATATTTTGCTTTTGAGAATGATGACATTGATGCTGTGTT
GGCTGATGTCAAGAGGAATGATGCCTCTGGTCAGCCTGCTACTGCGACAACTGGCAGCTACAAGCTTGTTGTCTCAGCACCAGAACCTAAGAGAATTGCA
TCTCCTGCCATCACAAACATTCAGGGGTGGTTGCCAGGGCTGAAAGCAGATGGAGATCCGAATCAACTTCCAACTATTGCTATTGTAGCATCATATGATA
CTTTTGGAACTGCACCTGCATTATCTGTTGGAAGTGATAGCAATGGGAGTGGCATTGTGGCTCTTCTTGAAATAGCTAGGTTATTTTCACTTCTTTATTC
TAATCCAAAGACAAGAGGACGGTATAACTTACTTTTTGGGCTAACATCCGGTGGACCTTATAACTACAATGGAACCCACAAGTGGCTTCGGAGCTTTGAT
CAACGTCTACGAGAAAGCATCGATTATGCTATTTGCTTGAATAGCATTGGCTCATGGGATAACAAATTGTGGATTCATGTGTCCAAGCCTCCTGAGAATG
CCTTAATTAAACAAATATTTGAAGGTTTCTCTACTGTAGCAGAAGAGCTGGGCATTGAAGTTAGTTTGAAGCACAAGAAAATTAATATCTCAAATCCTCG
AGTAGCTTGGGAGCACGAGCAGTTTTCAAAGCTGAGGGTCACGGCTGCTACCCTTACCGGACTTTCTGCACCACCTGAACTGTTAGAAAGAACTGGAGGT
CTATCTGACAGCAGACATTTTGTAAACGAAGATGCAATAGTTAGAAGTATCAAGCTAGTTGCTGAGAATATCGCGAGGCATGTCTATGATTACCAAGGGA
AAAACATTCAAATCTTTGCGGATGACACTAGTTTGGCTGTCAATGCTCCTTACATAAGATCCTGGTTGGATCTTTTGTCACAAACACCTCGAGTGGCACC
ATTTCTATCAAAGAATGACCCATTTGTCATGGCACTGAAAAAGGAATTAGAAGATCATACTCATGAAGTAAATGTGCAACATGAGGTGCTCGATGGGATG
TTCACAATCTATGACTCAACTAAAGCTAAACTAAACATATACCAGGTTGCTAGTGTAACATTCGACTTGCTGTTGCTTCTAGTGCTAGGATCATATTTGA
TTATACTTTTCACTTTTCTTGTCATCACAACAAGGGGTCTTGATGATCTCATAAGTTTATTCCGACGGCCTCCCTCTCGTAAGGTGAAAGCTGCATGA
AA sequence
>Potri.004G198200.2 pacid=42794908 polypeptide=Potri.004G198200.2.p locus=Potri.004G198200 ID=Potri.004G198200.2.v4.1 annot-version=v4.1
MSSRKQRERQMLESIYSMIALVFILVTCIELCDAATVVDVYRLIQYDISGAQFGSRFATLNHHAGSLHLPPGVDLSRTVVIIPVRELNITLVKEFIAQRK
PLGGLLFLLPQMLNFENRDPTSESKYQIHEKKLTKNVLVELERLLIYANIPYPVYFAFENDDIDAVLADVKRNDASGQPATATTGSYKLVVSAPEPKRIA
SPAITNIQGWLPGLKADGDPNQLPTIAIVASYDTFGTAPALSVGSDSNGSGIVALLEIARLFSLLYSNPKTRGRYNLLFGLTSGGPYNYNGTHKWLRSFD
QRLRESIDYAICLNSIGSWDNKLWIHVSKPPENALIKQIFEGFSTVAEELGIEVSLKHKKINISNPRVAWEHEQFSKLRVTAATLTGLSAPPELLERTGG
LSDSRHFVNEDAIVRSIKLVAENIARHVYDYQGKNIQIFADDTSLAVNAPYIRSWLDLLSQTPRVAPFLSKNDPFVMALKKELEDHTHEVNVQHEVLDGM
FTIYDSTKAKLNIYQVASVTFDLLLLLVLGSYLIILFTFLVITTRGLDDLISLFRRPPSRKVKAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G44330 unknown protein Potri.004G198200
[exp]
0 1
AT2G33040 ATP3 gamma subunit of Mt ATP syntha... Potri.012G066100
[exp]
2.82 0.9453 ATPC.1
AT5G20080 FAD/NAD(P)-binding oxidoreduct... Potri.006G218600
[exp]
4.24 0.9376
AT5G14030 translocon-associated protein ... Potri.001G323400
[exp]
4.58 0.9472
AT3G53020 RPL24B, STV1 SHORT VALVE1, Ribosomal protei... Potri.015G141900
[exp]
4.89 0.9482
AT4G30160 ATVLN4, VLN4 villin 4 (.1.2) Potri.018G089700
[exp]
6.70 0.9394 Pt-VLN4.2
AT5G51510 unknown protein Potri.012G127100
[exp]
10.77 0.9134
AT1G42480 unknown protein Potri.005G253600
[exp]
11.74 0.9178
AT2G16595 Translocon-associated protein ... Potri.004G168500
[exp]
14.69 0.9359
AT2G38710 AMMECR1 family (.1.2) Potri.008G019200
[exp]
14.76 0.8919
AT1G01050 ATPPA1 pyrophosphorylase 1 (.1) Potri.002G181300
[exp]
14.86 0.9317

Potri.004G198200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.