Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22330 788 / 0 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G67630 345 / 1e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G49830 332 / 8e-110 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160600 [exp] 854 / 0 AT5G22330 812 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G096800 [exp] 362 / 3e-121 AT5G67630 764 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G118900 [exp] 354 / 2e-118 AT5G67630 758 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040479 [exp] 772 / 0 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011283 [exp] 770 / 0 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011551 [exp] 347 / 3e-115 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019267 [exp] 346 / 6e-115 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06068 [poplar] [flax] TIP49 TIP49 P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.004G199100.1 pacid=42796381 polypeptide=Potri.004G199100.1.p locus=Potri.004G199100 ID=Potri.004G199100.1.v4.1 annot-version=v4.1 ATGAATATCGAAGAGGTACAGTCCACTGCCAAGAAACAGAGAATAGCTACGCACACTCACATCAGAGGCCTTGGCCTTGAGCCTAGTGGAAGAGCCATTG ATATGGCTGCTGGATTTGTGGGTCAGAAAGAGGCTAGAGAAGCAGCTGGGCTTGTAGTCGATATGATAAAGCAGAAGAAGATGGCTGGCCGTGCTCTCCT CTTAGCTGGGCCTCCAGGAACTGGAAAGACAGCTTTGGCTCTTGGAGTTTCACAGGAACTTGGAACTAAGGTTCCATTTTGTCCAATGGTTGGATCAGAA GTATACTCATCTGAAGTTAAGAAAACTGAGGTATTGATGGAAAATTTTCGAAGGGCTATTGGTCTACGTATCAAGGAGAATAAAGAGGTCTACGAGGGAG AGGTGACTGAACTCTCTCCAGAAGAAACTGAAAGTTTAACTGGTGGCTACGGTAAAAGCATTGGTAGTGTAATTATTGGGCTAAAAACCATCAAAGGAAC AAAGCAACTACGATTGGAAGCCAGTATTTATGATGCCTTGATCAAGGAGAAGGTAGCTGTGGGAGATGTTATATACATTGAAGCAAATAGTGGAGCAGTC AAAAGAGTGGGTCGAAGTGATGCTTTTGCTACAGAATTCGACCTTGAAGCAGAGGAGTATGTCCCGCTCCCTAAGGGAGAAGTTAGCAAAAAGAAGGAGA TAGTTCAGGATGTAACTCTGCATGATCTAGATGCTGCCAATGCAAGGCCTCAAGGTGGGCAAGATATATTGTCTCTAATGGGCCAAATGATGAAGCCTAG AAAAACAGAAATCACTGATAAGCTACGACAGGAAATAAATAAGGTTGTTAATGGATTTATTGATAAGGGCACTGCAGAGCTTGTTCCTGGAGTTCTATTC ATCGACGAGGTACATATGCTGGATATGGAGTGCTTTTCGTACTTGAATCGTGCTTTGGAGAGCTCGCTGTCGCCCATAGTGATCTTTGCTACAAATAGAG GAATATGTAACGTAAGAGGGACAGATATGAATAGTCCTCATGGCATCCCTGTTGACTTGTTGGATCGATTGGTGATTATCCGAACACAAACTTATGGTCC TGCTGAGATGATACAGATTTTAGCAATCCGTGCACAGGTCGAGGAACTGCACATAGATGAAGAGAGTCTAGCTGACCTTGGAGAGATTGGACAACGCACA TCATTGAGGCATGCGGTTCAGCTATTATCACCTGCCAGCATTGTGGCAAAACTGAATGGTCGAGAAGAGATATGCAAGGCGGATCTCGACGAAGTGTGTG CATTGTATCTGGATGCCAAGTCATCGGCCAAGCTACTTCAGGATCAGCAGGAGAAGTACATTTCGTGA
AA sequence Show only first row Show all	>Potri.004G199100.1 pacid=42796381 polypeptide=Potri.004G199100.1.p locus=Potri.004G199100 ID=Potri.004G199100.1.v4.1 annot-version=v4.1 MNIEEVQSTAKKQRIATHTHIRGLGLEPSGRAIDMAAGFVGQKEAREAAGLVVDMIKQKKMAGRALLLAGPPGTGKTALALGVSQELGTKVPFCPMVGSE VYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEETESLTGGYGKSIGSVIIGLKTIKGTKQLRLEASIYDALIKEKVAVGDVIYIEANSGAV KRVGRSDAFATEFDLEAEEYVPLPKGEVSKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNGFIDKGTAELVPGVLF IDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMNSPHGIPVDLLDRLVIIRTQTYGPAEMIQILAIRAQVEELHIDEESLADLGEIGQRT SLRHAVQLLSPASIVAKLNGREEICKADLDEVCALYLDAKSSAKLLQDQQEKYIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.004G199100 [exp]	0	1
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	2.64	0.8600
AT4G02930			GTP binding Elongation factor ...		Potri.002G215900 [exp]	6.92	0.8275	Pt-TUFA.3
AT3G49080			Ribosomal protein S5 domain 2-...		Potri.012G144700 [exp]	11.53	0.7860
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	12.00	0.8262
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	12.64	0.7820
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.007G104700 [exp]	13.74	0.7832
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	13.96	0.8058
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	15.96	0.7748
AT5G11630			unknown protein		Potri.006G237800 [exp]	17.14	0.7910
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	18.89	0.7737	Pt-PURE.2

Compare expression of checked genes

Potri.004G199100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.