Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22320 355 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G19680 65 / 3e-11 Leucine-rich repeat (LRR) family protein (.1) AT4G35470 54 / 2e-07 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT3G11330 52 / 7e-07 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 51 / 1e-06 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G15410 50 / 2e-06 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G34680 50 / 3e-06 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT1G78230 48 / 2e-05 Outer arm dynein light chain 1 protein (.1) AT4G03260 47 / 2e-05 Outer arm dynein light chain 1 protein (.1.2) AT2G17440 47 / 3e-05 PIRL5 plant intracellular ras group-related LRR 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097800 [exp] 74 / 8e-14 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.005G164000 [exp] 69 / 3e-12 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.006G163900 [exp] 67 / 8e-12 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G086200 [exp] 65 / 2e-11 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.007G065000 [exp] 60 / 2e-09 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.019G119500 [exp] 59 / 4e-09 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.013G150300 [exp] 58 / 1e-08 AT4G03260 504 / 2e-170 Outer arm dynein light chain 1 protein (.1.2) Potri.005G098600 [exp] 58 / 1e-08 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.006G072700 [exp] 56 / 3e-08 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013308 [exp] 425 / 3e-146 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10005198 [exp] 376 / 8e-127 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10033444 [exp] 72 / 4e-13 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10020932 [exp] 72 / 4e-13 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10010891 [exp] 64 / 2e-11 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10012715 [exp] 65 / 3e-11 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10032668 [exp] 56 / 2e-08 AT3G15410 261 / 2e-84 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10038534 [exp] 52 / 1e-06 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10023270 [exp] 52 / 1e-06 AT2G34680 1368 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10000900 [exp] 50 / 2e-06 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G199200.3 pacid=42795612 polypeptide=Potri.004G199200.3.p locus=Potri.004G199200 ID=Potri.004G199200.3.v4.1 annot-version=v4.1 ATGGCTAGCTTGAGCAGCCAGCAAGTGTTGAAGGAGAAACAGACTCGCGACGCTGACACCATTACTTCTATCTCTCTCACTCACAGAAATCTTTCCGATA TTTCATGCTTGAGCGAATTCCAAAACTTGGAAAGGCTCGACCTTGCCTTCAATAATCTCACTTCTCTCCAGGGACTGAGTTCGTGTGTGAAGTTGAAGTG GTTGTCAGTTGTGCAAAACAAATTGGAAAGCTTGAAAGGAATTGAATCACTCTCTAACCTCACTGTGTTAAACGCGGGAAAAAATAAGATTAAATCAATT GATGAAGTTCGGTCTCTGGTTAGCTTACGCGCCTTGATTTTGAACGACAATGAGATTGTTTCGATTTGCAAACTTGATCAAATGAAGGAGTTGAACACTC TTGTTTTGTCTAGAAATCCAATCCGTGAAATTGGTGAATCTCTGTTCAAGGTGAAATCTATGACAAAGCTTTCACTCTCGAATTGTCATCTTCAGACCAT TGGCTCATCACTGAAATCCTGCATTGAGCTGAAAGAGCTCCGACTTGCTCATAATGATATCAAGACTCTTCCAGCTGAATTGGCTCATAACAAGAAGCTC CAGAATTTGGACTTGGGGAATAATTTGATCACAAGATGGTCAGATGTAAAGGTGCTGAGTTCTCTAGTTGATCTGAAAAACCTTAATCTACTGGGAAACC CAATTGCTGAGAATGCCAAAATAACCAAGAAGGTCCAGAAATTTTTGCCAAACTTGCATATATTCAATGCTAGACCTGTAGATAAAAGTGCCAGGAACGA AATCAGTGGTAGAGCTGATGATTCTTCACTTATCCCTACCAATGAGCTTGACTATCATTCAGAAAAGAAAAAAGACCATACAAGGGATGTGAATTCCTCC AAGCATGTGACGGATCAAAGACGTGATCACTTTGATAATGCTAGTGATGATGCGGAGAAGGATTTGAGGCAAAAAAGGAAGAAAACAAAGGGTAAAGTCT CAAAGATGGAAGAAGCTTCAACTGATGAAAAGGATGATGCTGTGATTGAAAAGAAATTAAAGAGGAAAAAACCACATGAGGAGCTATTGAAAAACAATGA TGATAAGATCCATAATGATGATAGAACTAAAGTTGAAAAGAAACTGAAGAGTAAAAAGTCAAGGAAAGAACTAAGTGAACTCGATATTATCGATAACGGG GAAGTATCATTTGCAGACCTTTTCTCGGTTGATGCTGTAGAAAATCTGAAACATAACAGTGAAAGTAAAACAGTTGACAAAAGTGGTATAAATGTTCTGG GTGGCTTGCTTGCTGTCTCTGCAAAGAAAAAGAAAACTAAAAACCAGGGTTTGGTTTCTACAGTCCCATTGTCCCCTGCAGTTGAAGTTGGAATGGGTGG ACCTTCAACATGGGGTGATGAGTAG
AA sequence Show only first row Show all	>Potri.004G199200.3 pacid=42795612 polypeptide=Potri.004G199200.3.p locus=Potri.004G199200 ID=Potri.004G199200.3.v4.1 annot-version=v4.1 MASLSSQQVLKEKQTRDADTITSISLTHRNLSDISCLSEFQNLERLDLAFNNLTSLQGLSSCVKLKWLSVVQNKLESLKGIESLSNLTVLNAGKNKIKSI DEVRSLVSLRALILNDNEIVSICKLDQMKELNTLVLSRNPIREIGESLFKVKSMTKLSLSNCHLQTIGSSLKSCIELKELRLAHNDIKTLPAELAHNKKL QNLDLGNNLITRWSDVKVLSSLVDLKNLNLLGNPIAENAKITKKVQKFLPNLHIFNARPVDKSARNEISGRADDSSLIPTNELDYHSEKKKDHTRDVNSS KHVTDQRRDHFDNASDDAEKDLRQKRKKTKGKVSKMEEASTDEKDDAVIEKKLKRKKPHEELLKNNDDKIHNDDRTKVEKKLKSKKSRKELSELDIIDNG EVSFADLFSVDAVENLKHNSESKTVDKSGINVLGGLLAVSAKKKKTKNQGLVSTVPLSPAVEVGMGGPSTWGDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22320			Leucine-rich repeat (LRR) fami...		Potri.004G199200 [exp]	0	1
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	3.00	0.8329
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	4.00	0.7504
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Potri.014G086700 [exp]	5.29	0.7507
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	7.74	0.7878
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.001G269700 [exp]	7.74	0.7130	Pt-GR1.2
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	8.66	0.7823
AT1G63490			transcription factor jumonji (...		Potri.003G126600 [exp]	12.00	0.7643
AT5G12230		MED19A	unknown protein		Potri.009G156200 [exp]	13.22	0.7163
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Potri.013G151600 [exp]	16.97	0.7424	CDC48.4
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	17.66	0.7545

Compare expression of checked genes

Potri.004G199200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.