Plant FIBer expression Database

Potri.004G199300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27310 247 / 5e-80 F-box family protein (.1)
AT3G44326 240 / 7e-77 F-box family protein (.1)
AT2G36090 221 / 6e-70 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G160700
[exp]
437 / 2e-154 AT2G27310 221 / 9e-70 F-box family protein (.1)
Potri.006G208400
[exp]
268 / 8e-88 AT2G36090 275 / 7e-91 F-box family protein (.1)
Potri.005G208200
[exp]
141 / 1e-38 AT2G27310 130 / 3e-34 F-box family protein (.1)
Potri.002G054500
[exp]
139 / 4e-38 AT2G27310 122 / 2e-31 F-box family protein (.1)
Potri.001G452000
[exp]
103 / 7e-25 AT2G36090 115 / 2e-29 F-box family protein (.1)
Potri.017G092800
[exp]
47 / 9e-06 AT5G39250 334 / 7e-117 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021330
[exp]
258 / 6e-84 AT2G36090 266 / 2e-87 F-box family protein (.1)
Lus10013309
[exp]
251 / 2e-81 AT2G27310 247 / 4e-80 F-box family protein (.1)
Lus10017006
[exp]
248 / 6e-80 AT2G36090 255 / 4e-83 F-box family protein (.1)
Lus10028024
[exp]
146 / 1e-40 AT2G27310 158 / 4e-45 F-box family protein (.1)
Lus10003731
[exp]
145 / 4e-40 AT2G27310 160 / 3e-46 F-box family protein (.1)
PFAM info
Representative CDS sequence
>Potri.004G199300.2 pacid=42795576 polypeptide=Potri.004G199300.2.p locus=Potri.004G199300 ID=Potri.004G199300.2.v4.1 annot-version=v4.1
ATGGTTGCTCTCTCCACACCACCACCGCAACAACCATCATCAACTACCACACAAGATGGAACCATCTCTACTCTCCACCCCGACATCCTCCAGACTCATA
TTCTCACCCTCCTAGACGGCCCAACCCTGGCTGCTACAGCCTGTGCATCATCAGAATTATATGCTCTCTCTACAGAAGATAAACTCTGGCGAAATATCTG
CACTTCCTCTTGGCCATCCATTAATGATCCAACTGTCAGTAGCATCATCTCCACCTTCTCTTCCGGGCACCGGTCATTTTTCTCAGACTCATACCCTCTC
CTCCACCACCACCATCACAGCTCATCGTTTCTGACAACAAGCACTGAATATCTTGTCTCGGCAGTTGATATTTATTACAAGGATGTTGCTATTTTCTCAA
AAGTTGAAAAGAATGAGACTTTGACTGATTGGTTCAAGTGCTCTCCCTTCAGGGTCGACATGCTCGAGCCCAAAGAGTTTGTGCAGACATTGATACAATA
TCAAACAGGTGAAAAAGACTCGTTTGTGAAGCAACTTGAAGAAAATATGACGTTAAGTTGGATTTTGATTGATCCAAAAAGAAGAAGGGCTATGAATTTG
TCAAGTGGGAGGCCAGTGTCAGTGCAGAGGCACTGGCTAACTGGGGAAGTGGTGGTGAAGTTTGCCACCATAATGGCCGGAGATGGAGGGGAGAAGGAGT
TTGTGGAGTGTGGAGTGATGGTTTGTTGTGGGAAGAAGGAAGGAGGGGAGATGGAGGTGAGAGAGATAAGTATGGGAATGGAGGACATGGAAGGGAGGAA
CTTGACCGGGAAGGAGAGTTTGGTAGTAATTCAAGAAGCAATGGAGAGAGGGGAGAGGAGGAAAGGGAAATGTGGGACGGAAGGGAAAGGAAGGTATGAG
GAATTTGTAGAGAGGAAGAGGGAGAGGAAAGCAAGGAAGCAGAAGATGGAAAAGGTTTTGGACATGGTTTGCATTGTTACTGGGATCACCATTTTTGTGT
CTTCTTGGTCCTTCATTTTGTTCAGCTAG
AA sequence
>Potri.004G199300.2 pacid=42795576 polypeptide=Potri.004G199300.2.p locus=Potri.004G199300 ID=Potri.004G199300.2.v4.1 annot-version=v4.1
MVALSTPPPQQPSSTTTQDGTISTLHPDILQTHILTLLDGPTLAATACASSELYALSTEDKLWRNICTSSWPSINDPTVSSIISTFSSGHRSFFSDSYPL
LHHHHHSSSFLTTSTEYLVSAVDIYYKDVAIFSKVEKNETLTDWFKCSPFRVDMLEPKEFVQTLIQYQTGEKDSFVKQLEENMTLSWILIDPKRRRAMNL
SSGRPVSVQRHWLTGEVVVKFATIMAGDGGEKEFVECGVMVCCGKKEGGEMEVREISMGMEDMEGRNLTGKESLVVIQEAMERGERRKGKCGTEGKGRYE
EFVERKRERKARKQKMEKVLDMVCIVTGITIFVSSWSFILFS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27310 F-box family protein (.1) Potri.004G199300
[exp]
0 1
AT2G27740 Family of unknown function (DU... Potri.009G147500
[exp]
2.00 0.8838
AT1G20970 unknown protein Potri.006G191500
[exp]
5.29 0.8596
AT1G19430 S-adenosyl-L-methionine-depend... Potri.002G260600
[exp]
6.48 0.8723
AT1G07980 CCAAT NF-YC10 "nuclear factor Y, subunit C10... Potri.009G012300
[exp]
7.21 0.8461
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Potri.006G023151
[exp]
7.48 0.8505
AT5G20600 unknown protein Potri.012G036500
[exp]
8.94 0.8540
AT5G02030 HD PNY, BLR, BLH9,... VAAMANA, REPLUMLESS, PENNYWISE... Potri.010G197300
[exp]
9.00 0.8273
AT1G68090 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5... Potri.010G101800
[exp]
9.79 0.8468 Pt-ANN5.1
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Potri.006G022800
[exp]
11.74 0.8314
AT1G04850 ubiquitin-associated (UBA)/TS-... Potri.001G316400
[exp]
15.96 0.8395

Potri.004G199300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.