Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11590 398 / 9e-131 unknown protein AT5G22310 228 / 4e-67 unknown protein AT1G50660 165 / 7e-43 unknown protein AT3G20350 147 / 5e-37 unknown protein AT5G41620 130 / 1e-31 unknown protein AT1G64180 119 / 3e-28 intracellular protein transport protein USO1-related (.1) AT2G46250 94 / 5e-20 myosin heavy chain-related (.1) AT1G11690 55 / 3e-08 unknown protein AT1G64690 42 / 0.0007 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160900 [exp] 899 / 0 AT3G11590 399 / 9e-132 unknown protein Potri.016G074300 [exp] 481 / 3e-162 AT3G11590 560 / 0.0 unknown protein Potri.006G207800 [exp] 467 / 6e-157 AT3G11590 582 / 0.0 unknown protein Potri.003G135000 [exp] 196 / 9e-54 AT5G41620 494 / 1e-167 unknown protein Potri.014G093400 [exp] 172 / 9e-46 AT5G41620 347 / 8e-111 unknown protein Potri.001G096200 [exp] 169 / 1e-44 AT5G41620 523 / 6e-180 unknown protein Potri.011G090100 [exp] 166 / 1e-43 AT1G50660 689 / 0.0 unknown protein Potri.002G166600 [exp] 162 / 3e-42 AT5G41620 345 / 6e-110 unknown protein Potri.004G015800 [exp] 140 / 6e-35 AT1G50660 390 / 1e-126 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013311 [exp] 390 / 1e-127 AT3G11590 332 / 1e-105 unknown protein Lus10005200 [exp] 378 / 9e-123 AT3G11590 322 / 1e-101 unknown protein Lus10017001 [exp] 358 / 1e-114 AT3G11590 587 / 0.0 unknown protein Lus10013312 [exp] 343 / 1e-110 AT3G11590 285 / 1e-88 unknown protein Lus10021324 [exp] 337 / 2e-105 AT3G11590 530 / 3e-180 unknown protein Lus10017543 [exp] 172 / 3e-45 AT5G41620 500 / 6e-170 unknown protein Lus10028746 [exp] 166 / 5e-44 AT5G41620 497 / 4e-170 unknown protein Lus10043111 [exp] 163 / 1e-42 AT1G50660 616 / 0.0 unknown protein Lus10032637 [exp] 163 / 2e-42 AT1G50660 625 / 0.0 unknown protein Lus10040076 [exp] 162 / 4e-42 AT1G50660 756 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G199500.2 pacid=42794461 polypeptide=Potri.004G199500.2.p locus=Potri.004G199500 ID=Potri.004G199500.2.v4.1 annot-version=v4.1 ATGGAGGCAAAAAGCAGAGAGCAGCAGCAGTGTAAGATAAGAAAGAGAGGGAACTCATCGTCTTCATCGTCTTCTTTAGTCAAAAAGTACAGATTCAAGA GAGCTATTCTTGTTGGAAAGAGAGGTGGGTCTAGTACTCCTGTTCCAATCTGGATGACAAGCTCAAAATCTCCAACTTTGGCAGAGCCAAATGCTGAATC CACCAAGTGCACACCACATCAAAATGGAAGCAAAGCCAAAGAAGTCTCAGTTTCTGCAAGAAAATTAGCTGCCACTTTGTGGGAGATCAATGGAATACCT TCACCAAGAGTTAAAAAGGATTTGGAAGACAAGAACGAGGTTAGAAGCAGAGAAAAGGTGGCAAGGTTGCCACACTTGTCAGATCCATCTTACACTCCTT TTTCAGAGAGGATGGAGCGATCTAGAGGCCATAGTCATAGGAGAAGAACATCAGTTGTTACAAAGACACTTCAGCTTACTGATTATCATCTTGGAGGTCT GGATTCTGTTGGCAATTCCAGTTTGATGGAGATTGAAAGTCATCCGAAAGGCCGGTCTCGTACAATTGAAATTAAGACCTGTTTGAAGGATGTTAGTAAT GGGCTGACCACCTCCAAGGAGCTCTTGAAAGTTTTGAATCATGTTTGCGGTCTTGAGGAGAAGCACTCATCAGGCTTGTCTCTTGTCTCCGCCCTTCGGA TTGAGCTTGATAGAGCCTGCATTTCGGTCAATCAATTGATAAGAGAACAGCGATCAAACCGCAGTGAGATTGAGTACCTTGTTAAGCATTTTGAGGAAGA GAAGGCAGCTTGGAAGAGCAAGGAGCGAGATAGGATTCGCAGTGCTATAGCATGCATTGCAGAAGAGCTTGAAATTGAGAGGAAATTAAGAAGACAAACA GAGAGATTGAATAAGAAGCTTGGGAAAGAGTTGGCCGATACAAAGGAATCTCTGTCAAAGGCAATGAAAGAGCTAGAGACTGAAAAAAGGGCGAAAGAGA TATTAGAGCAAGTTTGTGATGAGCTGGCTAGAGGTATAGGGGACGACAGAGCTGAGGTTGAAGAAATGAAAAAAGAATCTGCGAAGGTGAGAGATGAGGT GGAGAAAGAAAGGGAAATGCTTCAGCTTGCTGATGTATTGCGTGAAGAAAGAGTCCAGATGAAGCTCTCTGAGGCTAAGTACCATTTCGAGGAGAAAAAT GCAGCGGTGGAGAGGTTAAGAAATGAGCTCGAGACCTACTTGAGAGAAAAAGTAGGTGAAAAAGATGGTGATGGCTCTCCAAATTATGACAGGATTAAAG AGCTTGAAGCTTACTTAGAGGAAATCCAATTCGGATCGTGTCAACAGGCCGAGAGAGAAGAAAATAAAGGGGGCGCAACAGGAAATGGAGAAGTTCATGA CGGAGATGATTCAGCGGATAGTGATCTTCATTCAATTGAATTAAACATGGACAATAACAGCAAGAGCTACAAATGGTGTTACGCTTCCGAGGACAATTCG AAGTGGTTTTCAGGAGGTAAAGATTTCAAGGGAAGGAAGTCGATCTCCGATAATATTCAATGGGGAAACATTTGCCTGCAAAGAAGAAATTCCAATGGTA TTGATGGTCTTGGCCGTGACTTGATCAGTGAAAATCAGGCAAGACCAGATATGCCCGATCAGGAAAGGGTAGCCGAGCTTGGTTTCAATTCTCAAGCACA AGGTTATGAAGATGAAATTAGGAAATATAGGTCAGTGAGGACTCTCAAAGACCACATATTATCTGGCCCTAAAAGATCACCAATACGAAACTTTGCTAGT CCTACGCGGCTGTGGGGGCAATCCTTGCCTTTTCAAGAGTCTGGCAGTGTAGTTTCGGATGGTTCACCTGTGATACAAGGGAATAATTTGAAGCCCAGGA TAGCAGGAACAGGAGGTAATTGTCGAACTTCAACAAGCTCCAGACATTAA
AA sequence Show only first row Show all	>Potri.004G199500.2 pacid=42794461 polypeptide=Potri.004G199500.2.p locus=Potri.004G199500 ID=Potri.004G199500.2.v4.1 annot-version=v4.1 MEAKSREQQQCKIRKRGNSSSSSSSLVKKYRFKRAILVGKRGGSSTPVPIWMTSSKSPTLAEPNAESTKCTPHQNGSKAKEVSVSARKLAATLWEINGIP SPRVKKDLEDKNEVRSREKVARLPHLSDPSYTPFSERMERSRGHSHRRRTSVVTKTLQLTDYHLGGLDSVGNSSLMEIESHPKGRSRTIEIKTCLKDVSN GLTTSKELLKVLNHVCGLEEKHSSGLSLVSALRIELDRACISVNQLIREQRSNRSEIEYLVKHFEEEKAAWKSKERDRIRSAIACIAEELEIERKLRRQT ERLNKKLGKELADTKESLSKAMKELETEKRAKEILEQVCDELARGIGDDRAEVEEMKKESAKVRDEVEKEREMLQLADVLREERVQMKLSEAKYHFEEKN AAVERLRNELETYLREKVGEKDGDGSPNYDRIKELEAYLEEIQFGSCQQAEREENKGGATGNGEVHDGDDSADSDLHSIELNMDNNSKSYKWCYASEDNS KWFSGGKDFKGRKSISDNIQWGNICLQRRNSNGIDGLGRDLISENQARPDMPDQERVAELGFNSQAQGYEDEIRKYRSVRTLKDHILSGPKRSPIRNFAS PTRLWGQSLPFQESGSVVSDGSPVIQGNNLKPRIAGTGGNCRTSTSSRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11590			unknown protein		Potri.004G199500 [exp]	0	1
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.006G094700 [exp]	5.19	0.8060
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G135800 [exp]	11.13	0.7984
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.003G133500 [exp]	12.24	0.7732
AT5G23750			Remorin family protein (.1.2)		Potri.001G107000 [exp]	13.92	0.8156
AT5G13090			unknown protein		Potri.001G059400 [exp]	18.33	0.7850
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Potri.008G098400 [exp]	21.07	0.6728	Pt-AGL3.1
AT3G26380			Melibiase family protein (.1)		Potri.008G185300 [exp]	27.03	0.7703
AT5G42350			Galactose oxidase/kelch repeat...		Potri.002G007700 [exp]	29.91	0.7968
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013200 [exp]	31.30	0.7622
AT5G07620			Protein kinase superfamily pro...		Potri.004G232800 [exp]	33.58	0.7544

Compare expression of checked genes

Potri.004G199500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.