Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NIT2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 578 / 0 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44300 472 / 7e-168 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 463 / 3e-164 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44310 461 / 4e-163 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT2G27450 78 / 5e-16 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 62 / 2e-10 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT4G08790 57 / 8e-09 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT5G64370 46 / 3e-05 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207700 [exp] 378 / 1e-129 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.016G074200 [exp] 373 / 3e-127 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.004G201400 [exp] 69 / 5e-13 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.006G222900 [exp] 70 / 6e-13 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.008G047100 [exp] 61 / 3e-10 AT4G08790 465 / 3e-166 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.010G214600 [exp] 56 / 1e-08 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.009G161001 [exp] 72 / 5e-08 AT5G22300 53 / 3e-07 nitrilase 4 (.1) Potri.007G115900 [exp] 43 / 0.0003 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013313 [exp] 621 / 0 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10005201 [exp] 613 / 0 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10011234 [exp] 274 / 7e-89 AT5G22300 274 / 3e-89 nitrilase 4 (.1) Lus10021322 [exp] 275 / 8e-89 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10018449 [exp] 271 / 8e-88 AT5G22300 281 / 6e-92 nitrilase 4 (.1) Lus10016999 [exp] 82 / 4e-18 AT5G22300 83 / 5e-19 nitrilase 4 (.1) Lus10020627 [exp] 72 / 7e-14 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10026464 [exp] 71 / 2e-13 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10011198 [exp] 58 / 2e-10 AT5G22300 62 / 3e-12 nitrilase 4 (.1) Lus10004862 [exp] 58 / 4e-09 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [poplar] [flax] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Potri.004G199600.1 pacid=42795538 polypeptide=Potri.004G199600.1.p locus=Potri.004G199600 ID=Potri.004G199600.1.v4.1 annot-version=v4.1 ATGCAAGCAACTGTACCAGTTTCATCATCACTTCATACAACAAGTACAGCAGCAGACCCAACAGCGCTCTCCACACAGACCAACAACATGGCTCTTGTCC CTGCCCCACCATCAGAAACCCCACTTTTTGCAGAAGTAGACATGTGTTCCGATTCTTCAGCAACGACTGTCCGTGCCACTGTTATCCAAGCCTCCACTGT CTTCTATGACACTCCTGCCACTCTAGATAAGGCTGAGAGATTTCTGGCTGAAGCAGCTGGATATGGGTCTCAATTGGTTGTGTTTCCTGAAGCATTTATT GGTGGTTATCCTAGAGGATCAAGTTTTGGTGCTACCATTGGTAGTCGTACAGCTAAAGGTAGAGAGGATTTCAGAAAGTATCATGCTTCAGCCATTGATG TTCCTGGTCCAGAAGTTGACCGTTTGGCTGCAATGGCTGGGAAGTATAAGGTGTATTTGGTGATGGGTGTGATTGAGAGGGAGGGATATACACTCTACTG TACCGTGTTGTTTTTTGATTCTCAAGGTCATTACATGGGGAAGCATAGGAAAGTTATGCCGACGGCGGTGGAGCGTATAGTATGGGGTTTTGGAGATGGA TCAACGATTCCGGTTTTTGGGACTCCGATTGGGAAAATTGGTGCCGCTATCTGTTGGGAAAATAGAATGCCACTCCTAAGGACTGCAATGTATGGTAAAG GTATTGAAATATATTGTGCACCAACAGCTGATTCCAGGGATACTTGGCAAGCAACGATGACCCACATTGCTCTTGAGGGAGGATGTTTTGTACTATCTGC CAACCAGTTTTGCCGGAGGAAGGATTACCCACCTCCCCCAGAGTATGTCTTTTTGGGCGTGGAAGAAGACCTCACACCCGATTCTGTTGTCTGTGCTGGA GGCAGTGTTATTATATCACCATTGGGAACTGTTTTGGCTGGACCCAATTATGATGGGGAGGCACTGATTTCTGCAGATCTAGATCTTGGAGAAATAGCTA GGGCAAAATTTGACTTTGATGTGGTTGGACATTACTCAAGACCTGAAGTTCTCAGCTTGACTGTGAGGGACCATCCAACAAATGCAGTTATGTTCACATC AGAATCAGCAAAAACTGAAGCCTCTCGTAAATAG
AA sequence Show only first row Show all	>Potri.004G199600.1 pacid=42795538 polypeptide=Potri.004G199600.1.p locus=Potri.004G199600 ID=Potri.004G199600.1.v4.1 annot-version=v4.1 MQATVPVSSSLHTTSTAADPTALSTQTNNMALVPAPPSETPLFAEVDMCSDSSATTVRATVIQASTVFYDTPATLDKAERFLAEAAGYGSQLVVFPEAFI GGYPRGSSFGATIGSRTAKGREDFRKYHASAIDVPGPEVDRLAAMAGKYKVYLVMGVIEREGYTLYCTVLFFDSQGHYMGKHRKVMPTAVERIVWGFGDG STIPVFGTPIGKIGAAICWENRMPLLRTAMYGKGIEIYCAPTADSRDTWQATMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFLGVEEDLTPDSVVCAG GSVIISPLGTVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLTVRDHPTNAVMFTSESAKTEASRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.004G199600 [exp]	0	1	Pt-NIT2.2
AT1G79090			unknown protein		Potri.011G143900 [exp]	6.00	0.8712
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.010G055000 [exp]	8.60	0.8116
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Potri.009G096300 [exp]	9.53	0.8448
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	13.34	0.8725
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.006G214800 [exp]	13.41	0.8399
AT1G03290			unknown protein		Potri.014G139000 [exp]	16.97	0.8500
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041400 [exp]	17.34	0.8547
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.018G000800 [exp]	20.97	0.8490
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.015G020500 [exp]	21.07	0.8662
AT5G35690			unknown protein		Potri.014G160400 [exp]	24.26	0.8315

Compare expression of checked genes

Potri.004G199600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.