Plant FIBer expression Database

Potri.004G199801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16295 67 / 3e-14 SPH1 S-protein homologue 1 (.1)
AT4G29035 62 / 1e-12 Plant self-incompatibility protein S1 family (.1)
AT5G04350 52 / 7e-09 Plant self-incompatibility protein S1 family (.1)
AT5G38435 52 / 8e-09 SPH8 S-protein homologue 8 (.1)
AT4G16195 48 / 4e-07 Plant self-incompatibility protein S1 family (.1)
AT1G11765 47 / 4e-07 Plant self-incompatibility protein S1 family (.1)
AT3G16970 46 / 1e-06 Plant self-incompatibility protein S1 family (.1)
AT3G26870 45 / 1e-06 Plant self-incompatibility protein S1 family (.1)
AT3G26880 45 / 2e-06 Plant self-incompatibility protein S1 family (.1)
AT5G04347 45 / 3e-06 Plant self-incompatibility protein S1 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G199700
[exp]
111 / 1e-31 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1)
Potri.016G066900
[exp]
73 / 1e-16 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1)
Potri.002G252500
[exp]
66 / 6e-14 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1)
Potri.003G201300
[exp]
47 / 5e-07 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1)
Potri.018G148630
[exp]
44 / 9e-06 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1)
Potri.018G148366
[exp]
43 / 1e-05 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1)
Potri.010G008300
[exp]
42 / 3e-05 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1)
Potri.006G170200
[exp]
42 / 4e-05 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1)
Potri.003G175200
[exp]
42 / 5e-05 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011892
[exp]
71 / 6e-16 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1)
Lus10042506
[exp]
71 / 2e-15 AT4G16295 112 / 5e-32 S-protein homologue 1 (.1)
Lus10022824
[exp]
69 / 3e-15 AT5G04347 67 / 9e-15 Plant self-incompatibility protein S1 family (.1)
Lus10022826
[exp]
69 / 4e-15 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1)
Lus10039546
[exp]
66 / 1e-13 AT4G16295 56 / 3e-10 S-protein homologue 1 (.1)
Lus10029383
[exp]
65 / 2e-13 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1)
Lus10016351
[exp]
63 / 1e-12 AT4G16295 57 / 1e-10 S-protein homologue 1 (.1)
Lus10019779
[exp]
62 / 3e-12 AT4G16295 58 / 6e-11 S-protein homologue 1 (.1)
Lus10029390
[exp]
61 / 3e-12 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1)
Lus10016350
[exp]
61 / 3e-12 AT2G06090 59 / 1e-11 Plant self-incompatibility protein S1 family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05938 Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence
>Potri.004G199801.1 pacid=42796729 polypeptide=Potri.004G199801.1.p locus=Potri.004G199801 ID=Potri.004G199801.1.v4.1 annot-version=v4.1
ATGGTTCTCTTCAATACTCTTACCACTGGACCACCTACTAGATGGTTAAAAAAACATGCAATATTATTCTTTCATGTTCTGGCAATCGCCGTCAGCCCCT
CTGTAGCTTTCAAAATATGGAATCCCTTCAAGTGGACTGTGCATATTGTCAACGAATTGAGCCACAACAAGGTGTTGTATTTGCATTGCGTATCTTATAA
TGACAATCTTGGCCATCACAATCTCAAGTATAAGGCTGAATTCAAGTTTAGTTTCATGGAAAACTTCCTCGGGGCAACAATATTTAAGTGCTATATGTCC
CGGGACAGGAAAATCGATGCTACTTTCACCGTCTTCTGGCCTGGATTTCTACGCAGAGAGAATCAGGACATTGACCTAGAGAAGGATACCGTAGGCAGTA
ACGTCATCCGGGTAGCAAGAGATGATGGGATTTATTTGAAGAGACGAGAAGCTTGTTTTTTCAGTTGTATATTCTCCAAACCTCCCGTGAAGGTCTTTTT
GTACAAAAAATGGGATAAAAAATGA
AA sequence
>Potri.004G199801.1 pacid=42796729 polypeptide=Potri.004G199801.1.p locus=Potri.004G199801 ID=Potri.004G199801.1.v4.1 annot-version=v4.1
MVLFNTLTTGPPTRWLKKHAILFFHVLAIAVSPSVAFKIWNPFKWTVHIVNELSHNKVLYLHCVSYNDNLGHHNLKYKAEFKFSFMENFLGATIFKCYMS
RDRKIDATFTVFWPGFLRRENQDIDLEKDTVGSNVIRVARDDGIYLKRREACFFSCIFSKPPVKVFLYKKWDKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16295 SPH1 S-protein homologue 1 (.1) Potri.004G199801
[exp]
0 1

Potri.004G199801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.