Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 256 / 2e-85 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 256 / 4e-85 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 254 / 2e-84 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 253 / 2e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 243 / 1e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 243 / 2e-80 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 242 / 3e-80 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 241 / 6e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 237 / 5e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 233 / 9e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G106100 [exp] 481 / 4e-174 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 407 / 8e-145 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 341 / 8e-119 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 339 / 5e-118 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 315 / 1e-108 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 310 / 1e-106 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 305 / 1e-104 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 305 / 2e-104 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 301 / 4e-103 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021320 [exp] 325 / 2e-112 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 322 / 3e-111 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 296 / 5e-101 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 295 / 2e-100 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 294 / 4e-100 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 291 / 4e-99 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 290 / 1e-98 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 288 / 6e-98 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 288 / 1e-97 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 284 / 1e-95 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.004G199900.2 pacid=42794904 polypeptide=Potri.004G199900.2.p locus=Potri.004G199900 ID=Potri.004G199900.2.v4.1 annot-version=v4.1 ATGGGGAGTGTTTCACTTGTCTCAGCAGCCCTAAGAAGGCTAGAAGGCAAGGTGGCATTGATCACTGGAGGGTCTAGTGGCATAGGAGAGTCCGCTGCTA GACTGTTCGCCAAACATGGAGCTAAAGTGGTGATTGCAGACGTTCAAGATGAACTAGGCCACTCTGTTTGCGAAGAATTGAAGACTGAATCAGCCTCATT CGTCCACTGTGATGTTACTCAAGAAAAAGATGTTGAAAATGCTGTTAACACAGCTGTTTCTAAGCATGGAAAGCTGGACATCATGTTCAATAATGCAGGA ATAGTAGGCACGCCAAAACCAAACATACTTGACAATGACAAGGCTGAATTTGAGAAGGTCATTAGTGTTAATGTCGTGGGCGCATTCTTAGGCACTAAGC ACGCAGCCCGCGTAATGATCCCTGTTCGGCGAGGTAGCATAATCTCAACCGCTAGCGTTTGCGGAACAATTGGAGGTGTTGCATCACATGCCTACACAAG TTCAAAGCATGGCGTGATAGGGTTAATGAGAAACACAGCTGTGGAGTTAGGGCAGCATGGCATCCGTGTAAATTGCGTGTCGCCCTACGTTGTTTTGACC CCATTGGTGAAGGATTTCTTTAAGCTGGATGATGATGAAGTAAATCGTCTTTACTCTAATCTGAAAGAAGCAGTTCTGAAAGCAGAAGACATTGCTGAGG CTGCTCTTTTTCTGGGGAGTGATGAGTCCAAGTATGTTAGTGGACATAATTTGATTGTAGACGGGGGCTTCACCATTGTTAATCCAGGTTTTTGTATGTT TCCACAATCTATTTGA
AA sequence Show only first row Show all	>Potri.004G199900.2 pacid=42794904 polypeptide=Potri.004G199900.2.p locus=Potri.004G199900 ID=Potri.004G199900.2.v4.1 annot-version=v4.1 MGSVSLVSAALRRLEGKVALITGGSSGIGESAARLFAKHGAKVVIADVQDELGHSVCEELKTESASFVHCDVTQEKDVENAVNTAVSKHGKLDIMFNNAG IVGTPKPNILDNDKAEFEKVISVNVVGAFLGTKHAARVMIPVRRGSIISTASVCGTIGGVASHAYTSSKHGVIGLMRNTAVELGQHGIRVNCVSPYVVLT PLVKDFFKLDDDEVNRLYSNLKEAVLKAEDIAEAALFLGSDESKYVSGHNLIVDGGFTIVNPGFCMFPQSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.004G199900 [exp]	0	1
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.005G211300 [exp]	1.73	0.8802
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Potri.002G006700 [exp]	2.00	0.8540
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177600 [exp]	4.89	0.8218
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023550 [exp]	11.40	0.7344
					Potri.008G106450 [exp]	11.44	0.7005
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063101 [exp]	13.74	0.8364
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Potri.005G187300 [exp]	16.52	0.7164
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.018G096000 [exp]	18.16	0.7807
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063050 [exp]	19.87	0.8210
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235600 [exp]	20.00	0.7646

Compare expression of checked genes

Potri.004G199900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.