Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06270 71 / 8e-17 unknown protein AT3G11600 67 / 3e-15 unknown protein AT5G22270 60 / 6e-13 BIN4 ? unknown protein AT1G16500 42 / 2e-05 unknown protein AT3G52561 39 / 8e-05 unknown protein AT1G79160 40 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161400 [exp] 112 / 3e-33 AT5G06270 91 / 9e-25 unknown protein Potri.006G206000 [exp] 79 / 3e-20 AT5G06270 108 / 8e-32 unknown protein Potri.016G073400 [exp] 79 / 4e-20 AT5G06270 115 / 2e-34 unknown protein Potri.010G241400 [exp] 52 / 3e-09 AT3G11600 56 / 7e-11 unknown protein Potri.005G096800 [exp] 46 / 7e-07 AT1G79160 209 / 7e-68 unknown protein Potri.007G067300 [exp] 41 / 4e-05 AT1G79160 164 / 3e-50 unknown protein Potri.011G153600 [exp] 39 / 0.0002 AT1G79160 124 / 6e-35 unknown protein Potri.001G446800 [exp] 38 / 0.0005 AT1G79160 113 / 7e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034181 [exp] 69 / 5e-16 AT3G11600 87 / 3e-23 unknown protein Lus10016982 [exp] 67 / 2e-15 AT5G06270 122 / 4e-37 unknown protein Lus10021305 [exp] 67 / 3e-15 AT5G06270 122 / 8e-37 unknown protein Lus10004209 [exp] 66 / 6e-15 AT5G06270 100 / 4e-28 unknown protein Lus10029413 [exp] 66 / 6e-15 AT5G06270 100 / 4e-28 unknown protein Lus10043404 [exp] 64 / 5e-14 AT3G11600 78 / 1e-19 unknown protein Lus10002577 [exp] 42 / 2e-05 AT2G33510 99 / 1e-26 unknown protein Lus10001804 [exp] 41 / 6e-05 AT2G33510 145 / 8e-44 unknown protein Lus10031179 [exp] 39 / 0.0004 AT1G79160 197 / 5e-63 unknown protein Lus10031755 [exp] 39 / 0.0004 AT1G79160 201 / 1e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G200300.2 pacid=42796186 polypeptide=Potri.004G200300.2.p locus=Potri.004G200300 ID=Potri.004G200300.2.v4.1 annot-version=v4.1 ATGTTTCATTCATTCTCTAAGGAAATGAGTCGAGTAGGAGATAGCCCCATGTTGGATTTGGAGCTGAACCTTTCACCATCTAGGCCTAACCCGCTAGTCG AATCACCGAAGGCATCGATTTCGAATTCATCTTCTGAAATATTGTCAGCAGAGAGCTCTTGTGTTTCATCAGAGCCTGAAGACATGACTGTTAACTTCCC CAGAAGCGTCGTCACAACTCCTATGTTAGTAGCTGGCTGTCCTCGATGCCTCATGTATGTTCTGTTATCCGAGGTGGATCCGAAATGTCCGAAATGCAAG AGCACAGTCTTGCTTGATTTTCTCAGCGTGGAAAACACCAAGAAGACAACGAGCTGA
AA sequence Show only first row Show all	>Potri.004G200300.2 pacid=42796186 polypeptide=Potri.004G200300.2.p locus=Potri.004G200300 ID=Potri.004G200300.2.v4.1 annot-version=v4.1 MFHSFSKEMSRVGDSPMLDLELNLSPSRPNPLVESPKASISNSSSEILSAESSCVSSEPEDMTVNFPRSVVTTPMLVAGCPRCLMYVLLSEVDPKCPKCK STVLLDFLSVENTKKTTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06270			unknown protein		Potri.004G200300 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014398 [exp]	5.09	0.9921
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Potri.018G131400 [exp]	6.70	0.9914
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073066 [exp]	7.07	0.9902
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Potri.002G253400 [exp]	8.24	0.9908
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082066 [exp]	9.48	0.9882
AT5G20740			Plant invertase/pectin methyle...		Potri.006G137800 [exp]	10.95	0.9875
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.017G120000 [exp]	12.84	0.9863
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008402 [exp]	15.81	0.9865
AT3G14240			Subtilase family protein (.1)		Potri.018G094400 [exp]	17.08	0.9492
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080400 [exp]	17.66	0.9856

Compare expression of checked genes

Potri.004G200300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.