Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52525 69 / 7e-15 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 63 / 2e-12 OFP Ovate family protein (.1) AT2G18500 58 / 4e-10 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G19650 54 / 5e-09 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G36030 51 / 5e-09 unknown protein AT1G06920 53 / 2e-08 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G22240 49 / 3e-07 OFP ATOFP10, OFP10 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 10, Ovate family protein (.1) AT2G30400 46 / 5e-06 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G58360 44 / 2e-05 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT5G01840 41 / 0.0002 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161700 [exp] 144 / 5e-44 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.006G205400 [exp] 76 / 4e-17 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.016G072800 [exp] 76 / 4e-17 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.007G028000 [exp] 69 / 8e-14 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.005G125200 [exp] 67 / 2e-13 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 64 / 2e-12 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.018G080100 [exp] 63 / 4e-12 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.006G156176 [exp] 60 / 5e-11 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.019G128500 [exp] 51 / 7e-08 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013318 [exp] 75 / 2e-16 AT3G52525 82 / 4e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10021302 [exp] 73 / 7e-16 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10005206 [exp] 73 / 8e-16 AT3G52525 82 / 2e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10041730 [exp] 69 / 3e-14 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10016978 [exp] 67 / 7e-14 AT3G52525 114 / 4e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10011092 [exp] 59 / 2e-10 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 57 / 6e-10 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10007159 [exp] 50 / 2e-08 AT3G52525 79 / 1e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10025241 [exp] 52 / 5e-08 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 52 / 5e-08 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [poplar] [flax] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Potri.004G200500.1 pacid=42796427 polypeptide=Potri.004G200500.1.p locus=Potri.004G200500 ID=Potri.004G200500.1.v4.1 annot-version=v4.1 ATGTCTTCAAAGAAGAAAAATCTCCTTCAATCCATACTCACACCCAATGCAGGCAGTGGCTGTGGCTGTGGCAGGCCAAAACTCTCAGATGTATACGAGC CAGCACCAAAACCTAAACCCAAAACCTCAATTTCCAAAAAAGATCCGAACCCTAAACATTGTTCCTCTACAATAACCTCATGTGATAAGAGTGTAGGCTT CTCATTACCGGACAGTGAAGAAGAAGGCTCCACTTCCACTACTTTCACTTTGAAAAAAGACAACAACACGTCATCAACCCAAAACTCCGAATCCGAAACC TATCCAAAAGCATCCAAAATCACTGACAGCATTGCTGTGGTGAAGGATTCTGATGACCCTTTTCAAGATTTCAAGAATTCTATGTCGCAAATGATCTTGG AGAAAAACATCTACTCTAAAGATGATCTTGAAGAGCTTCTTAACTTCTTCTTGGAGCTGAATTCTCCTTGCCAACATGATGTTATCGTTCAAGCTTTCAC TGAGATCTGGAAAGAGATCAGATGTTTGTCACATGAATCCTAG
AA sequence Show only first row Show all	>Potri.004G200500.1 pacid=42796427 polypeptide=Potri.004G200500.1.p locus=Potri.004G200500 ID=Potri.004G200500.1.v4.1 annot-version=v4.1 MSSKKKNLLQSILTPNAGSGCGCGRPKLSDVYEPAPKPKPKTSISKKDPNPKHCSSTITSCDKSVGFSLPDSEEEGSTSTTFTLKKDNNTSSTQNSESET YPKASKITDSIAVVKDSDDPFQDFKNSMSQMILEKNIYSKDDLEELLNFFLELNSPCQHDVIVQAFTEIWKEIRCLSHES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Potri.004G200500 [exp]	0	1
AT2G47010			unknown protein		Potri.019G076900 [exp]	4.79	0.8785
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	11.74	0.8571
AT1G19835			Plant protein of unknown funct...		Potri.002G024400 [exp]	26.83	0.8114
AT3G01810			unknown protein		Potri.001G333200 [exp]	27.56	0.8372
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	28.24	0.8392
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.011G096500 [exp]	29.46	0.8379
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	34.85	0.8217
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.007G135300 [exp]	36.74	0.8339
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.002G216000 [exp]	43.81	0.7906
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.001G416800 [exp]	45.43	0.8146

Compare expression of checked genes

Potri.004G200500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.