Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	2,Pt-E2F1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22220 458 / 1e-158 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT2G36010 404 / 3e-137 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT1G47870 250 / 2e-78 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G14960 67 / 9e-12 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT3G01330 62 / 3e-10 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1) AT3G48160 62 / 3e-10 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161900 [exp] 773 / 0 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.006G205100 [exp] 466 / 6e-162 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.016G072300 [exp] 447 / 9e-155 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.002G023400 [exp] 247 / 5e-77 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Potri.015G070300 [exp] 67 / 1e-11 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075300 [exp] 65 / 3e-11 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005209 [exp] 493 / 4e-174 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10013321 [exp] 454 / 9e-158 AT5G22220 351 / 2e-117 E2F transcription factor 1 (.2.3) Lus10016972 [exp] 452 / 2e-156 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 428 / 1e-146 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10004217 [exp] 425 / 5e-146 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 426 / 2e-145 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10033151 [exp] 242 / 2e-75 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Lus10032439 [exp] 64 / 1e-10 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10042941 [exp] 64 / 1e-10 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 55 / 8e-08 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02319 [poplar] [flax] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [poplar] [flax] PF16421 [poplar] [flax] E2F_CC-MB E2F transcription factor CC-MB domain
Representative CDS sequence Show only first row Show all	>Potri.004G200800.1 pacid=42794529 polypeptide=Potri.004G200800.1.p locus=Potri.004G200800 ID=Potri.004G200800.1.v4.1 annot-version=v4.1 ATGTCGAATTCTCAAGCACAAAACAACCAATCAATGAAGCAGCCGCAGCAAAGCAGTATGCAGAGTCACGCACCGAATCAGCGCCAGCATCAGCAACCGC TTTCGTTTTCTTCAATGAAGCCACCGTTTTTGCCTCCGGGTGACTACCACCGGTTCGGTGACGACCGACGACGTGCCGTTTCTGATCATGAAGTTGAGGG CATTGTTGTGAAACCTCCTACATTAAAGCGGAAGAGTGATGCAGCAGATCATCAAGGTGAGTCCAGTGACTGGAATGCTGGTCATGGATATATGGAAGTA GTGACCAGCCCCCTGCAGACACCTGTATCAGGAAAAGGGGGAAAGACACCCAAAACATCAAGACTCTCAAAGAGCAGTAAATCTGGATCTCAGAGTGCTG CTGCTGCTCTTGGTTCTCCTGGAAATAATCTTACTCCATCTGGTCCATGTCGCTATGACAGCTCTCTAGGTCTCTTGACTAAAAAATTCATCAATTTGAT CAAACATGCTGAAGATGGCATCCTTGATCTCAATAAAGCTGCTGAGACTTTAGAGGTTCAAAAAAGGCGGATATATGACATAACAAATGTTCTAGAAGGA ATTGGTCTTATAGAAAAGAAGCTCAAAAATAGAATTCAGTGGAAGGGACTTGATGTATCGAGGCCAGGGGAGGCGGATGATAATAACGTTGCCACTTTGC AGGCAGAAGTTGAAAACCTGACCATGGAGGAACGCAGATTAGATGAACAAACAAGAGAAATGCAAGAAAGATTGAGGGACCTCAGTGAAGATGAAAATAA TCAAAAGTGGCTTTTTGTCACTGAGGAAGACATCAAGAGCTTACCTGGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGTACCACTCTA GAAGTCCCAGATCCCGATGAGGCAGTTGATTATCCTCAGAGGAGATACAGGATAGTCCTTAGGAGTACAATGGGCCCAATAGATGTTTATCTTGTCAGTC AATTTGAAGAGAAAATTGAGGATATTCAAGGTGTTGAGCCACCTCCAAGCTATCCATCAACCTCAGGCTTCAATGAAAATCCAGCTACTACAATGACCAT GGAGGAGAGCAGAGGAAAGGAGGTTGAAATGCAGGAACAAGATGGTCATAGAATGTGCTCAGAACTTAACACCGCACATGACTTTGTGAGTGGGATCATG AAGATTGTTCCCTCAGATGTTGATAGTGATGCAGATTACTGGCTTTTATCAGATCCTGGTGTTAGCATTACAGACATGTGGCGTAACGAACCTGTGGTTG AATGGAATGACTTGGACACACTTCATAATGATTATGTCATGCCAAATGTCTGCACACCACAGCCCCAAACTCCACCATCTAATCCAACAGAAGTGCCTCC CGGTACTAACACGACTGCTGGATGA
AA sequence Show only first row Show all	>Potri.004G200800.1 pacid=42794529 polypeptide=Potri.004G200800.1.p locus=Potri.004G200800 ID=Potri.004G200800.1.v4.1 annot-version=v4.1 MSNSQAQNNQSMKQPQQSSMQSHAPNQRQHQQPLSFSSMKPPFLPPGDYHRFGDDRRRAVSDHEVEGIVVKPPTLKRKSDAADHQGESSDWNAGHGYMEV VTSPLQTPVSGKGGKTPKTSRLSKSSKSGSQSAAAALGSPGNNLTPSGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEG IGLIEKKLKNRIQWKGLDVSRPGEADDNNVATLQAEVENLTMEERRLDEQTREMQERLRDLSEDENNQKWLFVTEEDIKSLPGFQNETLIAIKAPHGTTL EVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKIEDIQGVEPPPSYPSTSGFNENPATTMTMEESRGKEVEMQEQDGHRMCSELNTAHDFVSGIM KIVPSDVDSDADYWLLSDPGVSITDMWRNEPVVEWNDLDTLHNDYVMPNVCTPQPQTPPSNPTEVPPGTNTTAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Potri.004G200800 [exp]	0	1	2,Pt-E2F1.2
AT4G23860			PHD finger protein-related (.1...		Potri.001G091600 [exp]	1.00	0.7170
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.009G157500 [exp]	5.47	0.7137
AT5G06560			Protein of unknown function, D...		Potri.006G199000 [exp]	19.10	0.6283
AT5G50930			Histone superfamily protein (....		Potri.015G105900 [exp]	23.87	0.6100
					Potri.001G142300 [exp]	29.86	0.6292
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.001G409100 [exp]	30.85	0.5616
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	31.32	0.6038
					Potri.003G193100 [exp]	31.36	0.6064
					Potri.004G034301 [exp]	56.12	0.5567
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.001G229700 [exp]	64.03	0.5000

Compare expression of checked genes

Potri.004G200800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.