Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62370 517 / 4e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 197 / 4e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 191 / 4e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19890 183 / 3e-49 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 176 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 174 / 6e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 166 / 6e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 163 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 161 / 6e-42 RPF2 rna processing factor 2 (.1) AT1G63070 160 / 6e-42 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 183 / 5e-49 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 181 / 2e-48 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 180 / 2e-48 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 179 / 1e-47 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 179 / 3e-47 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 176 / 3e-47 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 176 / 5e-47 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 172 / 1e-45 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 170 / 4e-45 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026558 [exp] 187 / 9e-50 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 174 / 2e-45 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 173 / 5e-45 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 170 / 3e-44 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013283 [exp] 166 / 1e-43 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027916 [exp] 165 / 9e-43 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 164 / 5e-42 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 163 / 9e-42 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 162 / 1e-41 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 161 / 1e-41 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G200900.2 pacid=42795720 polypeptide=Potri.004G200900.2.p locus=Potri.004G200900 ID=Potri.004G200900.2.v4.1 annot-version=v4.1 ATGATAAAAAGGAGACCTTTTTGTCATGCTCTCTACTTCAAACCCAAAAAAGGACCGATCACTTCAACCTGTGCTGTCTCTTTAGACCCCCAACCAATCC CAAATGACCACACGTCCCTTTGCCAATCCTTAGTTCATGACCTTCTTCGCCGCGGTCTTTTGTCCTCTGCACAGCAAGTTGTTCAGAGATTCATTGCCAG CTCTCCAACAGTCCATGATGCAATCTCCGCCGTTGAGTTTGCCTCCGCGAGTGGCATGGACCTTGGCCCTGGAATTTCTGGTGAACTTATTAGGAAATTG GTTGACTTGGGCCATCCTTTATCGGCGCGTGAGTTTTATCATGATCTTGTGGTTGCTAGAGGTATTGAGCCGGACTCGAATATTGTTAATTCTCTCGTTA TTTGTTTGGCCAAGTTAGGGAAATTAGATGATGCCGTAAAGCTTTTTGATAGACATATTGGTAGTGGTGATTGTTTGGTTAGTAATGCTGCTTGTAGCAC GATTCTTAAAGGGTTTTACGAGCAAGATAAGTTTGTGGAGGCATTTGATTATTTTGTTAGGATCAGTGATGCTAATGTGAAATTGGGTATGTGGGCTTAC AATGTTTTGATTGATGGATTGTGTCAACAAGGGTACGTGGGTGAAGCGATAGAAGTGTTAGATATAATGTGCAGAATAACTGGGTTGCCGCCTACTCTTC ATATGCTCAAGACATTGTTTTATGGGCTTTGCAAGAGAGGGTGGTCCATCGAGGCAGAGTGGATTTTTGAAGAGATGGAGGCACAAGGTTTCTTTGTGGA TAAGGTGATGTATACTTCGCTGATGAATGCTTATGGTAGGGATAAGAAGATGAAGATGGCACTGAGGGTTTATTTTAGAATGCTGAAGAATGGTTATGAC CCGGATATTTGTACTTGTAATACTTTGATTTATGGATTTTCAAAGATGGGTTTGTTTGATAAAGCGTGGGTGTTGTACAACCTGATGAATGACCTGGGGA TTCAGCCTAATGAGGTCACTTATAGTATAATGATTCATAATTATTGCAAGAAAGGGAAGTTGGATTGCGCTATGTCGCTTTTGAATAGCATGGCTCCCTG CAATTTGACTCCTTGTGTGCATTGTTATACGCCTATAATGGTCACTCTTTATAAGCTGAATAGGTGTTTGGAAGTTGATGAATGGTGTGAAAGAATGCTG GAAAGTGGAATTGTTCCGGACCATGTTTTGTTTTTTGTACTCATGAAGAATAAACCTAAGGGGCTTGGGTTTGAGCTTCAACTCTGTTTGTTGATGTTGC AGGCAATCGCCAAGAACGGGTGTGGGTTGGACTGTTCTTCACTCACAAATTCTGATAAGATAAATTCCACTCTGGCTTTGGAGCAAGAAATTGAGCTACT TCTGAGAGAAATTGCAAGAAGTGATTTGAATCTGGGTAATGTGGCTGGTGGTATCTATGTTAGTGCCTTGTGTGAAGGTGGAAAGACAGAATCTGCATTG GATTGCTTGGAAAATATGGTAAATGCGGGATGTGTTCCTTTGCTTTTCACTTTCAACTCTCTGATCAAACGTCTATTCCAGGACGGGCTTTCTGAGGATG TCAAATCTCTGATTGAAATTATGCAAAACTGGGGCATATCTCCAAACTTGGAAACTTATCTGATAATGGTAAATGAATACTGTAAACAAGAGGATCTGGC ATTGGCTTTTGGTATTTTGGAGCAGATGGATGAAATGGGTCTGAAACCTAGTGTAGCTATCTATGACTGCATTATTGCTTGTCTAAGCCAACAGAGGAGA ATCTCTGAAGCCGAAACTCTTTTCTGCAGGATGCTTGAGAATGGTGTGGATCCTGATGAAGTTGCCTATATGACAATGATCAATGCTTATGCTAGGAATG GAAAAGGTGTTAAAGCCCTCCATTTGTTTGAGATGATGATAAAGAATGCCATTCAGCCAAGTTCTTATTCTTACACTGCACTGGTAGCGGGTTAG
AA sequence Show only first row Show all	>Potri.004G200900.2 pacid=42795720 polypeptide=Potri.004G200900.2.p locus=Potri.004G200900 ID=Potri.004G200900.2.v4.1 annot-version=v4.1 MIKRRPFCHALYFKPKKGPITSTCAVSLDPQPIPNDHTSLCQSLVHDLLRRGLLSSAQQVVQRFIASSPTVHDAISAVEFASASGMDLGPGISGELIRKL VDLGHPLSAREFYHDLVVARGIEPDSNIVNSLVICLAKLGKLDDAVKLFDRHIGSGDCLVSNAACSTILKGFYEQDKFVEAFDYFVRISDANVKLGMWAY NVLIDGLCQQGYVGEAIEVLDIMCRITGLPPTLHMLKTLFYGLCKRGWSIEAEWIFEEMEAQGFFVDKVMYTSLMNAYGRDKKMKMALRVYFRMLKNGYD PDICTCNTLIYGFSKMGLFDKAWVLYNLMNDLGIQPNEVTYSIMIHNYCKKGKLDCAMSLLNSMAPCNLTPCVHCYTPIMVTLYKLNRCLEVDEWCERML ESGIVPDHVLFFVLMKNKPKGLGFELQLCLLMLQAIAKNGCGLDCSSLTNSDKINSTLALEQEIELLLREIARSDLNLGNVAGGIYVSALCEGGKTESAL DCLENMVNAGCVPLLFTFNSLIKRLFQDGLSEDVKSLIEIMQNWGISPNLETYLIMVNEYCKQEDLALAFGILEQMDEMGLKPSVAIYDCIIACLSQQRR ISEAETLFCRMLENGVDPDEVAYMTMINAYARNGKGVKALHLFEMMIKNAIQPSSYSYTALVAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	0	1
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	1.41	0.9458
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	2.23	0.9337
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	2.44	0.9358
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	3.00	0.9358
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.001G179100 [exp]	3.00	0.9181
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	4.24	0.9255
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	6.24	0.9088
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	6.48	0.9221
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	8.00	0.9198
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	8.12	0.9106

Compare expression of checked genes

Potri.004G200900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.