Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27285 105 / 2e-26 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT2G27280 87 / 2e-19 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT1G55928 68 / 3e-13 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162500 [exp] 280 / 2e-94 AT2G27285 215 / 5e-68 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038787 [exp] 133 / 4e-37 AT2G27285 225 / 6e-72 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10039072 [exp] 125 / 5e-34 AT2G27285 224 / 3e-71 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10020557 [exp] 112 / 3e-29 AT2G27285 240 / 5e-78 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10009414 [exp] 62 / 2e-11 AT2G27285 110 / 7e-29 Coiled-coil domain-containing protein 55 (DUF2040) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09745 [poplar] [flax] DUF2040 Coiled-coil domain-containing protein 55 (DUF2040)
Representative CDS sequence Show only first row Show all	>Potri.004G201300.2 pacid=42796008 polypeptide=Potri.004G201300.2.p locus=Potri.004G201300 ID=Potri.004G201300.2.v4.1 annot-version=v4.1 ATGAAGAAGTGTGAGTTGCAGCTAAGACAAACACAGCAGAAAAGGCCACCAAGACCTCCACTTCCCACGGCGCTTGGATTTGGAGGAGACGAAGACGATG ACGTGGAGAAGGATATTACACTTCAGGCTGCTAAGAACAAATCTCTCAAAGATACTGAAGAGCAGCAGAAGAAAGCGTTGGAAGAGGACCCATCAAAAAT TGCTCAGCCAAAAGCCCTAGATCGCGAAAAGAGAGAGTCTAAAAATATTAAGACTTTAATGGAGAAGGCACAGGAACGACAACGACAGCATGATAATGTT TTTGAGAAAAATCTTAGAGAAGATAAGTTTGTTACAGCTGCTTATAAGAGGAAACTTGCAGAGCAGGAGAAATGGATGGCGCAAGAGCGTTTGCGTGAAC TTAAAGAGGAGAAAGAGGATTGGCCAAGGAAGCAAGGGAAACAAGAGAAGCAAGCTGAATTTAGGAAGCTGGAGAACCTGGATGGTCAAGTCGCTGGCGA AACATCTGACAGAAATCATGCATTGTCAGACCCAAAGTTCGTGTCGAAGTCTTCCAGTGTGAAAGAGGTGCATCTGAATGAAACTTCCCCTCCAAGAAGT TCTGAGCCCTTGGATCCTAAGCCAGTATCTGATAAACCAGTTTCAGGCACTTCAACTGAAGGAAAAACTCCAGCTGAACAATCATCGGCCAGTCAACCAA ATCACGATCATCATAAAAGAAATCAAGATGCACTAGCTGCAGCTAAAGAACGGTTTTTGGCACGGAAGAAGGCGAAGGACCAGTGA
AA sequence Show only first row Show all	>Potri.004G201300.2 pacid=42796008 polypeptide=Potri.004G201300.2.p locus=Potri.004G201300 ID=Potri.004G201300.2.v4.1 annot-version=v4.1 MKKCELQLRQTQQKRPPRPPLPTALGFGGDEDDDVEKDITLQAAKNKSLKDTEEQQKKALEEDPSKIAQPKALDREKRESKNIKTLMEKAQERQRQHDNV FEKNLREDKFVTAAYKRKLAEQEKWMAQERLRELKEEKEDWPRKQGKQEKQAEFRKLENLDGQVAGETSDRNHALSDPKFVSKSSSVKEVHLNETSPPRS SEPLDPKPVSDKPVSGTSTEGKTPAEQSSASQPNHDHHKRNQDALAAAKERFLARKKAKDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27285			Coiled-coil domain-containing ...		Potri.004G201300 [exp]	0	1
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Potri.001G097600 [exp]	15.87	0.7225
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.006G221400 [exp]	43.88	0.7049
AT5G63390			O-fucosyltransferase family pr...		Potri.012G095166 [exp]	52.96	0.6729
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.006G097901 [exp]	69.16	0.7171
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Potri.006G169800 [exp]	139.17	0.7114
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074700 [exp]	140.84	0.7096
AT1G67590			Remorin family protein (.1.2)		Potri.008G178300 [exp]	182.29	0.6239
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Potri.016G048500 [exp]	209.98	0.6125
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.010G176000 [exp]	268.93	0.6183	IDH1.2
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.003G065000 [exp]	277.88	0.6143

Compare expression of checked genes

Potri.004G201300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.