Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22400 429 / 2e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 367 / 1e-123 rac GTPase activating protein (.1) AT1G08340 349 / 5e-118 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT2G46710 349 / 4e-116 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT4G03100 344 / 2e-114 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT4G24580 42 / 0.0009 REN1 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162900 [exp] 724 / 0 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.016G078200 [exp] 478 / 7e-166 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 454 / 1e-156 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.002G176800 [exp] 363 / 5e-121 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G135570 [exp] 352 / 8e-117 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 340 / 4e-112 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022700 [exp] 421 / 5e-144 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 421 / 6e-144 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10020625 [exp] 362 / 5e-122 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10005998 [exp] 357 / 4e-119 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10030213 [exp] 357 / 1e-118 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10024768 [exp] 337 / 7e-112 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10009778 [exp] 335 / 5e-111 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10004864 [exp] 305 / 2e-99 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10036167 [exp] 42 / 0.0009 AT4G24580 697 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [poplar] [flax] GAP PF00620 [poplar] [flax] RhoGAP RhoGAP domain CL0409 [poplar] [flax] PF00786 [poplar] [flax] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G201600.1 pacid=42796675 polypeptide=Potri.004G201600.1.p locus=Potri.004G201600 ID=Potri.004G201600.1.v4.1 annot-version=v4.1 ATGACTGAAGTCCTTCATTCTCCTTCACATTTCCCTTCTTCCCCTCCAACAACCTCGTCTTTGTCTTCTTCTTCCTCTTCTGTGACCTGTATACCCCCAC AATCTCCTTCAACACAAGATGGCATTGATGATGATGAGGAGGAGTTGGTGAAACAAAAAGAAAAGAATCAAAGGGATCAGCTTTCTTTATTGGCTCTTCT TGTGGCTCTGCTTAGGAAGTCTTTAGTAGCTTGTAAGAGTGACAGAAGGGAATTTTGTTCTAGTATGGAGATTGGTTGTCCAACCAATGTGCGCCATGTG GCTCATGTTACCTTTGATAGGTTTAATGGGTTCTTGGGTTTGCCTGTGGAGTTTGAGCCTGAAGTCCCCAGGAGGCCTCCCAGTGCTAGCGCAACTGTTT TCGGAGTTTCCACTGAATCTATGCAGTTGTCATATGACTCAAGAGGGAACAGTGTGCCAACAATTCTCTTGCTAATGCAAAGACGCTTGTATGCTCAAGG AGGCTTGCAGGCTGAAGGGGTTTTCAGAATTGCTGCAGAAAACAGTCAGGAGGAGTATGTGAGGGAGCAACTGAATGGCGGGGTGGTGCCAGAAGGGGTT GATGTACATTGTCTGGCAGGACTTATCAAGGCTTGGTTTAGAGAGCTTCCAACAGGGGTTCTGGATTCTTTATCACCTGAACAAGTAATAGAATGTCGAA CAGAAGATGATTGTGCTTATCTTGCAAGGAATCTACCTCCAACAGAAGCTGCTCTATTAGATTGGGCGATCAATCTGATGGCTGATGTTGTCCAACAAGA ACACCTGAACAAGATGAATGCACACAATGTAGCCACAGTTTTTGCGCCAAATATGACTCGAATGGCCGATCCTTTGACTGCATTGATGTATGCAGTCCAA GTAATGAACTTTCTCAAGACACTTATCCTAAGGACACTGCGAGAGAGAGAAGATTCTTTGGTGGAGCCTGCTCCTTCACGGATAGAGCCATTTGACAAGA ACGGTCACGAGAGCCCTTCACTGTCCTGTGCCAAAGATAGCGAAGATGAAAATGAAACAACTGAGCAAGCCTTTGTGGCTGAAGAACCTGTTGTAGAAAG TTCGTATCACTCCAGTCAATACAATGCCATAGCTGATGAAGCAGGCCTCAGTTATGCAACTTCAGTTGATAAGCTAATTGCCAAAGGAGATCGTTCCTGC GAGACTGCTTCCGAGGTTAACTTAGTCAATGACGCATATAATCATAGAGTTAATGCTGGCAATCAAGCAGGTATCGGAAAGAACAGCATTGGCCAATCAA GTAATTCAAGTCTCAGAAAGAGTCCTGGAAAATTTAGCAGGCAGTCACCTGTACTTCATTTAACACCACCTTCTGACAAGACTCGAGGAATTGGTAGCTG TATAGACTCAAGGTCAGAGCGTATTGAAGCTTGGCGATGA
AA sequence Show only first row Show all	>Potri.004G201600.1 pacid=42796675 polypeptide=Potri.004G201600.1.p locus=Potri.004G201600 ID=Potri.004G201600.1.v4.1 annot-version=v4.1 MTEVLHSPSHFPSSPPTTSSLSSSSSSVTCIPPQSPSTQDGIDDDEEELVKQKEKNQRDQLSLLALLVALLRKSLVACKSDRREFCSSMEIGCPTNVRHV AHVTFDRFNGFLGLPVEFEPEVPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRRLYAQGGLQAEGVFRIAAENSQEEYVREQLNGGVVPEGV DVHCLAGLIKAWFRELPTGVLDSLSPEQVIECRTEDDCAYLARNLPPTEAALLDWAINLMADVVQQEHLNKMNAHNVATVFAPNMTRMADPLTALMYAVQ VMNFLKTLILRTLREREDSLVEPAPSRIEPFDKNGHESPSLSCAKDSEDENETTEQAFVAEEPVVESSYHSSQYNAIADEAGLSYATSVDKLIAKGDRSC ETASEVNLVNDAYNHRVNAGNQAGIGKNSIGQSSNSSLRKSPGKFSRQSPVLHLTPPSDKTRGIGSCIDSRSERIEAWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22400			Rho GTPase activating protein ...		Potri.004G201600 [exp]	0	1
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.011G131900 [exp]	2.23	0.9125	ATK2.1
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	6.48	0.9098
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.015G105000 [exp]	8.06	0.8735	Pt-PHS1.2
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	11.61	0.8884
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	12.96	0.8983
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.017G079600 [exp]	16.43	0.8821
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.010G229600 [exp]	17.86	0.8758	RAB1.1
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.012G139100 [exp]	18.54	0.8239
AT4G34500			Protein kinase superfamily pro...		Potri.004G154000 [exp]	20.19	0.8699
AT2G41830			Uncharacterized protein (.1)		Potri.016G055100 [exp]	20.32	0.8337

Compare expression of checked genes

Potri.004G201600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.