Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27460 1266 / 0 sec23/sec24 transport family protein (.1) AT3G07100 111 / 6e-25 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT3G44340 87 / 3e-17 CEF clone eighty-four (.1.2) AT4G32640 84 / 2e-16 Sec23/Sec24 protein transport family protein (.1.2) AT2G21630 73 / 4e-13 Sec23/Sec24 protein transport family protein (.1) AT3G23660 70 / 3e-12 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 55 / 2e-07 Sec23/Sec24 protein transport family protein (.1) AT4G01810 53 / 8e-07 Sec23/Sec24 protein transport family protein (.1) AT4G14160 49 / 8e-06 Sec23/Sec24 protein transport family protein (.1.2.3) AT5G43670 43 / 0.0007 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G163300 [exp] 1411 / 0 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.010G211100 [exp] 112 / 4e-25 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.008G049700 [exp] 110 / 1e-24 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.013G035800 [exp] 92 / 6e-19 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.005G049100 [exp] 89 / 4e-18 AT4G32640 1238 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G178500 [exp] 77 / 2e-14 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 72 / 7e-13 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 64 / 4e-10 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G112600 [exp] 63 / 6e-10 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004866 [exp] 1366 / 0 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10020622 [exp] 1365 / 0 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10016597 [exp] 100 / 3e-21 AT3G07100 1212 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10000939 [exp] 86 / 8e-17 AT4G32640 1241 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10004122 [exp] 83 / 4e-16 AT4G32640 1209 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10043359 [exp] 75 / 2e-13 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 71 / 2e-12 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 70 / 5e-12 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 64 / 3e-10 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 59 / 1e-08 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04810 [poplar] [flax] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [poplar] [flax] vWA-like PF04811 [poplar] [flax] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [poplar] [flax] PF04815 [poplar] [flax] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Potri.004G201800.2 pacid=42795180 polypeptide=Potri.004G201800.2.p locus=Potri.004G201800 ID=Potri.004G201800.2.v4.1 annot-version=v4.1 ATGGCGGTTCGAGCTACAATGTCGCGATTTCCAATGGAAGAAGATGTGCAGGAATCATCAGGACTACCGTGGGGAATAACAGTTACGCCATTTGCTTCCA AAGACGAGAACGGACTGTCTCCTGTGTACGGATCGAACGGCGATTTGCTACCTCGCTGCGAGAACTGTTACGCTTACTTTAACACGTACTGTGAGCTTGA TCAGTGGGCCTGGAATTGTAGTCTATGTGGAACCCTCAACGGACTCGACTCTCAAGCCATCGCGCGTTACTCGCATCCTCAGTCTTGCGCTGAGATGATG TCCTCTTTTGTCGATCTCGAATTGCCTATGGAGGGATCGGATGAAGAAATGATGCAAGCCTGTCCGGTTTATGTTGCGGCGGTTGACTTGTCGTCTTCAG AAGAATTTTTGGAGCTTACTAAAAGTGCATTGCAAGCAGCTTTGGAAGCTCTTGCTCCTGGTTCTCTATTTGGGCTTGCTACCTTTAGCCACAAAATGGG GTTGTATGATGTTCAAGGGCCCATTCCAGTTGTAAAGAATGTTTTTATTCCTCCTGATATGGAAGGAACCCTTCCAACTGAGCTCGAAGATGTCATGCCT TTGTCACAATTCTTGGCCCCTGTGGAAACCTGTAAAGACCGTATTACTGCTGCACTTGACACTCTCAGACCAACAACCTCATGGGAGAGAACCACAGGTG CAGGACAAGGACTAGATGGAGTTCTAATGGGCGGGCGAGGTTTTGGTGTGGCAATGGAAGCCCTGTTGAAATACCTTGGGTCAGAATACGGAAATACATT TGCTTTAGCTAGAGTTTTTGCTTTCATATCCGGTCCTCCTGATTATGGTGCTGGGCAATTAGATACAAGAAGGTATGGTGAACAATATGCTAGTAAAGGA GAGGATGCAGACAGGGCTTTGCTTCCAGAGCAGACTCCATTTTACAAAGATCTGGCTGCTGTGGCTGTCCAAGCAGGTGTTTGTGTGGACATATTTGCTG TAACAAATGAGTATACGGATCTGGCATCCCTCAAGTTTCTTAGTATTGAAAGTGGAGGCACATTGTTTCTCTATTCAAACACTGATGACTCAACACTTCC TCAGGATATGTATCGGATGCTTAGTCGACCATATGCTTTCGGTTGCATACTGCGATTGAGGACATCTTCTGAATTCAAACCTGGTCATTCTTATGGACAT TTCTTCCCAGATCCACAGTATGAGAACGTTCAACACATTATTTGCTGCGATTCTTTTGCCACATATGCTTATGACTTTGACTTTACAAGTGCTACTGGAT TTTCCAGATATGCATCAGAACAACCAGTACTACAGATAGCATTTCAATACACAGTTGTTGTGCCTCCTGAGGAGCTCTCATCTCCAAGATTGGTTTCTGC TAGTAGAGGCAAGCATTTGCTTAAACGTCGATTAAGAATCAGAACTTTGCAATTTGGTACTGCTAGGAATATGAATGAACTTTATGACAATGTTGATTCT GAAGTTGTTCTATCAATACTTGTCCACAAGGTTATATTAGCCTCTTTGGAGCAAGGAGTCCGGGAGGGCAGGATGTTGCTTCACGATTGGCTCGTAATCC TCACTGCTCAGTATAATGATGCCTCTAAAATTGTCCAGTTTAAGAATGGTGGTTCATTAACTGCTCAGGTAGATGTTGCATTTTCACAGTGCCAACAACT GCAGCCCTTGCCTCGCCTAGTTTTTGCTTTGCTTCGAAATCCTCTTCTTCGCTTCCATGAAGAAGGTGTTCATCCTGACTACCGGATATACCTCCAATGC CTTTTTAGTGCACTGGAACCCAGTTCCCTTCAACGTGCTATATATCCAGTATTGACATCATATTCTACACCAGATAAACAAGCTTATCCTCGCCACTCTT TGAGTCGTGCTGCACTGATTACCAGTGATAGTCCAATATTTTTCCTTGACGCATTTACAACTTTAATTGTGTTCTATTCTTCTACGGCAGACCCAGCACT TCCTTTCCCTCCACCCCAAGATTGTTTATTGAGGAGCACGATTAACAAACTGAAGCAAGAAAGGAGTATCACTCCAAAATTGATTTTTATCCGGGGAGGG CAGGATGATGCCTCTGTTTTTGAGAACTACCTCATTGAGGAACAGCATGTTGATGGTAGTGGCTTTGCTAGTGTCATGGGTTTTGTGTCTTTCCTTGAAG ATGTAATCCAGAGCGTGTTGGAATACATGAAATAG
AA sequence Show only first row Show all	>Potri.004G201800.2 pacid=42795180 polypeptide=Potri.004G201800.2.p locus=Potri.004G201800 ID=Potri.004G201800.2.v4.1 annot-version=v4.1 MAVRATMSRFPMEEDVQESSGLPWGITVTPFASKDENGLSPVYGSNGDLLPRCENCYAYFNTYCELDQWAWNCSLCGTLNGLDSQAIARYSHPQSCAEMM SSFVDLELPMEGSDEEMMQACPVYVAAVDLSSSEEFLELTKSALQAALEALAPGSLFGLATFSHKMGLYDVQGPIPVVKNVFIPPDMEGTLPTELEDVMP LSQFLAPVETCKDRITAALDTLRPTTSWERTTGAGQGLDGVLMGGRGFGVAMEALLKYLGSEYGNTFALARVFAFISGPPDYGAGQLDTRRYGEQYASKG EDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGTLFLYSNTDDSTLPQDMYRMLSRPYAFGCILRLRTSSEFKPGHSYGH FFPDPQYENVQHIICCDSFATYAYDFDFTSATGFSRYASEQPVLQIAFQYTVVVPPEELSSPRLVSASRGKHLLKRRLRIRTLQFGTARNMNELYDNVDS EVVLSILVHKVILASLEQGVREGRMLLHDWLVILTAQYNDASKIVQFKNGGSLTAQVDVAFSQCQQLQPLPRLVFALLRNPLLRFHEEGVHPDYRIYLQC LFSALEPSSLQRAIYPVLTSYSTPDKQAYPRHSLSRAALITSDSPIFFLDAFTTLIVFYSSTADPALPFPPPQDCLLRSTINKLKQERSITPKLIFIRGG QDDASVFENYLIEEQHVDGSGFASVMGFVSFLEDVIQSVLEYMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27460			sec23/sec24 transport family p...		Potri.004G201800 [exp]	0	1
AT1G32260			unknown protein		Potri.001G138200 [exp]	1.00	0.8647
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Potri.011G102100 [exp]	5.00	0.8262
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.011G093000 [exp]	8.48	0.7962	TIM50.1
AT1G76770			HSP20-like chaperones superfam...		Potri.002G067700 [exp]	11.83	0.8466
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.017G059200 [exp]	15.62	0.7704
AT1G53420			Leucine-rich repeat transmembr...		Potri.006G014066 [exp]	21.77	0.8458
AT1G16740			Ribosomal protein L20 (.1)		Potri.004G095475 [exp]	22.09	0.8409
AT2G31740			S-adenosyl-L-methionine-depend...		Potri.001G317700 [exp]	29.74	0.8007
AT2G01480			O-fucosyltransferase family pr...		Potri.008G130600 [exp]	42.81	0.7791
AT4G18490			unknown protein		Potri.011G063500 [exp]	45.59	0.8151

Compare expression of checked genes

Potri.004G201800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.