Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27470 36 / 0.0007 CCAAT NF-YB11 "nuclear factor Y, subunit B11", nuclear factor Y, subunit B11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G163500 [exp] 55 / 6e-11 AT2G27470 145 / 6e-44 "nuclear factor Y, subunit B11", nuclear factor Y, subunit B11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004867 [exp] 47 / 8e-08 AT2G27470 133 / 7e-39 "nuclear factor Y, subunit B11", nuclear factor Y, subunit B11 (.1) Lus10020621 [exp] 46 / 2e-07 AT2G27470 136 / 3e-40 "nuclear factor Y, subunit B11", nuclear factor Y, subunit B11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G202050.1 pacid=42793966 polypeptide=Potri.004G202050.1.p locus=Potri.004G202050 ID=Potri.004G202050.1.v4.1 annot-version=v4.1 ATGGAGAAAGTAGTGGCAGAAGCAGAGGAGCTGCCGAAGGCTATTGTGTGCCGGATGGTGAAGGATGCTCTTTCCCGCTGCTCCCCTGACGAGTCTGAGA GCCTTCATTTTCATCCACTATCTTTCCGCCATGTAAGCCCTAAAATAACCCCCACAAATTTAATCCCTTTCATCTTCTCGATTTTGGGGTTGTTTTTTTG GAATTGCGCAAAAAATTCGGAATTGAGGGTTTTTTAG
AA sequence Show only first row Show all	>Potri.004G202050.1 pacid=42793966 polypeptide=Potri.004G202050.1.p locus=Potri.004G202050 ID=Potri.004G202050.1.v4.1 annot-version=v4.1 MEKVVAEAEELPKAIVCRMVKDALSRCSPDESESLHFHPLSFRHVSPKITPTNLIPFIFSILGLFFWNCAKNSELRVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.004G202050 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Potri.006G233100 [exp]	5.74	0.8272
					Potri.007G048600 [exp]	7.34	0.8594
AT1G51940			protein kinase family protein ...		Potri.008G187500 [exp]	7.93	0.8578
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.012G022100 [exp]	8.83	0.8479
AT1G53900			Eukaryotic translation initiat...		Potri.001G163300 [exp]	9.38	0.8208
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.008G203500 [exp]	9.48	0.8291
AT4G03420			Protein of unknown function (D...		Potri.019G103000 [exp]	9.79	0.8273
AT3G62200			Putative endonuclease or glyco...		Potri.013G003301 [exp]	11.48	0.8487
AT1G11700			Protein of unknown function, D...		Potri.011G003300 [exp]	12.44	0.8278
AT1G29350			Kinase-related protein of unkn...		Potri.001G353100 [exp]	13.03	0.8389

Compare expression of checked genes

Potri.004G202050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.