Plant FIBer expression Database

Potri.004G202200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27480 232 / 7e-77 Calcium-binding EF-hand family protein (.1)
AT5G04170 198 / 5e-62 Calcium-binding EF-hand family protein (.1)
AT3G10300 196 / 2e-61 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G163600
[exp]
330 / 2e-115 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1)
Potri.016G043600
[exp]
195 / 3e-61 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Potri.006G047300
[exp]
194 / 5e-61 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Potri.004G204700
[exp]
42 / 9e-05 AT5G12180 61 / 2e-11 calcium-dependent protein kinase 17 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043389
[exp]
313 / 1e-108 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1)
Lus10019545
[exp]
302 / 2e-104 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1)
Lus10035435
[exp]
202 / 5e-64 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Lus10042037
[exp]
198 / 5e-62 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Lus10018041
[exp]
197 / 5e-61 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Lus10031049
[exp]
184 / 6e-59 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5)
Lus10030134
[exp]
41 / 0.0006 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0220 EF_hand PF13202 EF-hand_5 EF hand
CL0220 EF_hand PF13405 EF-hand_6 EF-hand domain
Representative CDS sequence
>Potri.004G202200.2 pacid=42794953 polypeptide=Potri.004G202200.2.p locus=Potri.004G202200 ID=Potri.004G202200.2.v4.1 annot-version=v4.1
ATGTCTTTTTTATCTAAAATATTTCACTCATCATCTTATGCACCTTCTGCCCCATCTTTACCTGAGTCCTATGATCAGCGAGGCCAAACGTACAGTACTA
CTTCTTATCCAAGTAACTACAGCCATCAGCAACAGCAGCAGTCTTATTATGGGCAGGGCACTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTA
TTCATATGGGCACTCAGGGTTTCCTCCAGGAACTTCTCCGGATGTTATTAGGAGCTTTGAGATGGTTGATAGAGACAGGAGTGGATTTATTGATGAAAAT
GAGTTGCAACAAGCTCTTTCTTCTGGTTATCAAAGGTTTCATATTAAGACTGTTAGGTTGCTCATGTTTCTCTTCAAGAATCCTCATGATTCTCTACGAC
TTGGGCCCAAAGAGTTTGCTGCTTTATGGAGTTGTCTAGGTCAATGGAGGGGCATATATGAGAGATATGACAGAGACAGGAGTGGTAAAATTGATTTGCT
TGAACTGAGGGATGCTCTTTATGGCATTGGGCTTGCTACACCATCTTCAGTTCTTCAAGTTCTAATTTCCAAGTACGATGATGGAAGTGGCAGAAAGATT
GAGCTCAATTTCGACAGTTTCGTCGAGTGCGGGGTGATTTTGAAGGGATTGACTGAAAAATTCAAGGAGAAGGATAAGGGTTATACCGGCACAGCATCGT
TTGATTACGACGAATTCATGTCCATGGTCATTCCATTTCTTGTATCACATGACTGA
AA sequence
>Potri.004G202200.2 pacid=42794953 polypeptide=Potri.004G202200.2.p locus=Potri.004G202200 ID=Potri.004G202200.2.v4.1 annot-version=v4.1
MSFLSKIFHSSSYAPSAPSLPESYDQRGQTYSTTSYPSNYSHQQQQQSYYGQGTSGGGGGGGGGGGYSYGHSGFPPGTSPDVIRSFEMVDRDRSGFIDEN
ELQQALSSGYQRFHIKTVRLLMFLFKNPHDSLRLGPKEFAALWSCLGQWRGIYERYDRDRSGKIDLLELRDALYGIGLATPSSVLQVLISKYDDGSGRKI
ELNFDSFVECGVILKGLTEKFKEKDKGYTGTASFDYDEFMSMVIPFLVSHD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G27480 Calcium-binding EF-hand family... Potri.004G202200
[exp]
0 1
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.005G100900
[exp]
2.44 0.8532
AT2G44260 Plant protein of unknown funct... Potri.009G025102
[exp]
2.64 0.8566
AT5G63840 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN... Potri.006G039500
[exp]
4.35 0.8039
AT1G23210 ATGH9B6 glycosyl hydrolase 9B6 (.1) Potri.015G127900
[exp]
4.69 0.8548
AT4G28530 NAC ANAC074 NAC domain containing protein ... Potri.005G225800
[exp]
5.00 0.8331
AT3G57120 Protein kinase superfamily pro... Potri.008G037401
[exp]
6.48 0.8311
AT3G50700 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1... Potri.002G263600
[exp]
8.83 0.8123
AT3G06350 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST ... Potri.013G029800
[exp]
10.24 0.8101 DHQD2
AT1G05260 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Pe... Potri.017G038100
[exp]
10.90 0.8275
AT5G24010 Protein kinase superfamily pro... Potri.004G079700
[exp]
11.83 0.8119

Potri.004G202200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.