Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27500 541 / 0 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G32860 400 / 5e-138 Glycosyl hydrolase superfamily protein (.1) AT5G42100 384 / 9e-132 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G18340 372 / 1e-127 Glycosyl hydrolase superfamily protein (.1) AT3G15800 354 / 2e-120 Glycosyl hydrolase superfamily protein (.1) AT1G30080 352 / 1e-119 Glycosyl hydrolase superfamily protein (.1) AT2G26600 317 / 4e-106 Glycosyl hydrolase superfamily protein (.1.2) AT4G26830 306 / 5e-101 O-Glycosyl hydrolases family 17 protein (.1) AT5G42720 300 / 1e-98 Glycosyl hydrolase family 17 protein (.1) AT5G55180 294 / 7e-96 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G163700 [exp] 620 / 0 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 553 / 0 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G152400 [exp] 434 / 7e-152 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 432 / 1e-150 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.011G084900 [exp] 369 / 5e-126 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 363 / 5e-124 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 348 / 5e-118 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 340 / 4e-114 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 331 / 1e-110 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004869 [exp] 520 / 0 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 517 / 0 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10008277 [exp] 413 / 3e-143 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 407 / 1e-140 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 394 / 9e-137 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 392 / 3e-135 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 369 / 2e-126 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 366 / 1e-125 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 365 / 3e-124 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 347 / 2e-118 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.004G202400.2 pacid=42794682 polypeptide=Potri.004G202400.2.p locus=Potri.004G202400 ID=Potri.004G202400.2.v4.1 annot-version=v4.1 ATGGCCACCTGCTTTGTTCTTTCTCGTCTTCTTTTCTTGCTTCTCACTCTTTCAGATTCAGCTGTCAGGGTCCTTGGTGCTGGGCTTGGAATTAACTATG GTCAGATTGCCAACAACCTTCCATCTCCCTCTCGCGTTGCTGTGATGCTTCAATCCCTCAATGTCAGCAGGTTAAAACTCTATGATGCTGATCCGAATGT CCTACTTGCGTTTTCCAATTCAAATGTTGAGTTCATTATTGGGCTCGGGAATGAGTACCTTCAAGACATGACTGATCCCATCAAAGCTCAAAATTGGGTT CAACAACATCTTCAACCCCATATAACTCAAACCAAAATCACCTGCATCACTGTCGGAAACGAGGTGTTCATGAGCAATGATACTCGGTTATGGTCAAATC TCCTCCCGGCGATGAAAATGGTGTATAGCACTCTCGTTAATCTTGGATTAGATAAACAAGTGATTGTCACCAGTGCACATTCTTTTAATATCATAGGAAA TTCTTACCCTCCTTCATCCGGGACTTTTCGGCAAGATCTTGCCGAATACATCCAGGCAATCTTGAATTTTCATTCTCAAATCAAGTCACCATTCCTTATC AATGCATATCCTTTTTTTGCATACAAGGATAATCCAAACCAAATATCTCTAGAATATGTCCTTTTCCAGCCTAACCCAGGGATGACAGATCCGAACACAA ACTTGCATTATGATAATATGTTGTATGCTCAAGTAGATGCTGTGTATTCAGCGATTAAAGCAATGGGGCATACAGATATTGAAGTTATGATTTCGGAGAC AGGTTGGCCATCTAAGGGGGATCCTGATGAGGTCGGATCGACTCCAGAAAATGCAGCTCTATATCATAGTAATCTGTTAAATAGAATTCAGGCGAGGCAA GGTACACCAGCAAAACCATCTGTGCCGATAGACATATATGTTTTTGCGCTTTTTAACGAGAATTTAAAGCCCGGTCCAACATCTGAAAAGAACTATGGAC TCTTCTATCCTGATGGTACTCCAGTTTACAACAGTGGATTGCAGGGCTATCTTCCTGGAATAGTTTATTATTCTTCAGCATCCACTATAAATGAATGGTC TATCTTCAGCTTGGTGATCTTTGTTATGTCCGTACTTAAGATCACCTGA
AA sequence Show only first row Show all	>Potri.004G202400.2 pacid=42794682 polypeptide=Potri.004G202400.2.p locus=Potri.004G202400 ID=Potri.004G202400.2.v4.1 annot-version=v4.1 MATCFVLSRLLFLLLTLSDSAVRVLGAGLGINYGQIANNLPSPSRVAVMLQSLNVSRLKLYDADPNVLLAFSNSNVEFIIGLGNEYLQDMTDPIKAQNWV QQHLQPHITQTKITCITVGNEVFMSNDTRLWSNLLPAMKMVYSTLVNLGLDKQVIVTSAHSFNIIGNSYPPSSGTFRQDLAEYIQAILNFHSQIKSPFLI NAYPFFAYKDNPNQISLEYVLFQPNPGMTDPNTNLHYDNMLYAQVDAVYSAIKAMGHTDIEVMISETGWPSKGDPDEVGSTPENAALYHSNLLNRIQARQ GTPAKPSVPIDIYVFALFNENLKPGPTSEKNYGLFYPDGTPVYNSGLQGYLPGIVYYSSASTINEWSIFSLVIFVMSVLKIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27500			Glycosyl hydrolase superfamily...		Potri.004G202400 [exp]	0	1
AT2G01220			Nucleotidylyl transferase supe...		Potri.010G120200 [exp]	16.94	0.7050
AT2G35795			Chaperone DnaJ-domain superfam...		Potri.008G043500 [exp]	29.89	0.7063
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Potri.019G054000 [exp]	67.14	0.6533

Compare expression of checked genes

Potri.004G202400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.