Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 86 / 2e-17 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27180 74 / 6e-14 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G25510 72 / 4e-13 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44480 70 / 2e-12 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44670 69 / 4e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G14460 66 / 3e-11 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G27170 66 / 5e-11 transmembrane receptors;ATP binding (.1.2) AT5G17680 63 / 3e-10 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19050 62 / 4e-10 NB-ARC domain-containing disease resistance protein (.1) AT2G17060 60 / 2e-09 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G003600 [exp] 321 / 1e-98 AT3G14470 388 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.004G197800 [exp] 311 / 9e-97 AT3G14470 292 / 1e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170232 [exp] 302 / 6e-92 AT3G14470 367 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003200 [exp] 299 / 5e-91 AT3G14470 352 / 4e-103 NB-ARC domain-containing disease resistance protein (.1) Potri.014G002900 [exp] 297 / 3e-90 AT3G14470 397 / 2e-119 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 296 / 5e-90 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003832 [exp] 296 / 5e-90 AT3G14470 370 / 1e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 290 / 7e-88 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005400 [exp] 289 / 5e-87 AT3G14460 338 / 1e-95 LRR and NB-ARC domains-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016316 [exp] 79 / 3e-15 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 77 / 1e-14 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 76 / 3e-14 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 74 / 9e-14 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10001366 [exp] 74 / 1e-13 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002737 [exp] 73 / 1e-13 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 71 / 1e-12 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10001375 [exp] 69 / 5e-12 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007261 [exp] 66 / 3e-11 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014207 [exp] 66 / 4e-11 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G202683.1 pacid=42795269 polypeptide=Potri.004G202683.1.p locus=Potri.004G202683 ID=Potri.004G202683.1.v4.1 annot-version=v4.1 ATGGCTGCAGCTTTGTGTCCAGCTTTAAAAAGAGTGTCTCTAAAGCACATGAATAATCTAATGGAATGGAAAGTACCTGAAGCAGCAGCTGGTGGAATGG AAGTAGCATTTCCTTGCCTTGAAGAGTTGGAATTTAATAGGTGTCCGAAGTTGAAAAGAATTCCAACTATGAGGCATTTTTCATCAAAACTCGTAAGATT GACAATCAGAGACTGTGATGCATTGAGTCATATATCTGGTGGAGTACAGGCACTATTTCCTCTTCTCGAAGAGTTGTACATTGAACGTTGCAGGGAGTTG AAAAGCATCCCATCAATGAGCCATCTCTCATCAAAACTTTTAAGATTGACAATCAGACACTGTGATGCATTGAGTGATATGTCTGGCGAATTTCAAGCCT CTATGACATCTTTTAAATATTTAACCATAGAGTATTGTTCCAATCTGGCATCCATTCCAAGCCTTCAAAACTGCACAGCTCTGAAGGTATTGTCTATTTC TAAGTGCTCTAAGGTGGTGCCTATTATTCTAGAATTGCATTCTCTTAGAAGTGTATCCATCCGTTCGTGTGAAGAAGCATGTGTTCGAATTAGGTGGCCA CTATCCTGCGCAAATCTGGAGGATTTGAAAATAGAGCACTGCAGGGAGCTTATCTTTGATGATGATTTACATGGAGGAGAATTGTTGCCTTCTTCTTGTC TTCAATCACTAGTCATTATGCGTTGTGAATACTTGAAGTCTGTTCCTGATGGTTTAGAAAGAAGACTGCATTCTCTTGTTCGATTAGATATCAGTGGGTG TCCGAATTTAAGTCATATTCCGGAAGAATTCTTTCGCGGCCTCAACCAATTGGAGGTATTGCACATTGGTGGTTTCTCAGAGGAATTGGAGGCATTTCCT GGAATGAATTCAATCCACCACCTGAGTGGTTCCCTCAAAGAGCTAAAGATAATTGGATGGAAGAAACTGAAGTGTCTACCAAATCAACTTCAACACCTCA TCTCCCTTACGAAATTAAAGATCTATGGTTTCAACGGAGAGGAATTTGCGGAAGCTTTGCCACATTGGTTAGCCAACCTTTCTTCTCTTCAAGAGCTTAC AATTTCGGAATGTCAGAATCTCAAGTATCTTCCAAGTTCAACTGCCATGCAACGCCTCTCCAAATTAACACTTCTGAACATTAGGAGTTGTCCGCATCTT GATCGAAATTGCTTAAAGGGCAGCGGGTCTGAGCGGTCCACGATTTCTCATATCCCAAGTAGCAATATAGGAGTAGAGCGCAACTCCTCCAAAAATAAAT AG
AA sequence Show only first row Show all	>Potri.004G202683.1 pacid=42795269 polypeptide=Potri.004G202683.1.p locus=Potri.004G202683 ID=Potri.004G202683.1.v4.1 annot-version=v4.1 MAAALCPALKRVSLKHMNNLMEWKVPEAAAGGMEVAFPCLEELEFNRCPKLKRIPTMRHFSSKLVRLTIRDCDALSHISGGVQALFPLLEELYIERCREL KSIPSMSHLSSKLLRLTIRHCDALSDMSGEFQASMTSFKYLTIEYCSNLASIPSLQNCTALKVLSISKCSKVVPIILELHSLRSVSIRSCEEACVRIRWP LSCANLEDLKIEHCRELIFDDDLHGGELLPSSCLQSLVIMRCEYLKSVPDGLERRLHSLVRLDISGCPNLSHIPEEFFRGLNQLEVLHIGGFSEELEAFP GMNSIHHLSGSLKELKIIGWKKLKCLPNQLQHLISLTKLKIYGFNGEEFAEALPHWLANLSSLQELTISECQNLKYLPSSTAMQRLSKLTLLNIRSCPHL DRNCLKGSGSERSTISHIPSSNIGVERNSSKNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	0	1
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	2.00	0.8687
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197800 [exp]	4.00	0.8408
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.016G090800 [exp]	5.47	0.8248
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	7.14	0.8200
AT1G28320		DEG15	protease-related (.1)		Potri.004G046900 [exp]	9.79	0.8278
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	13.07	0.8114
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	13.78	0.8396
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	13.96	0.8277
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	14.69	0.8359
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	17.02	0.8297

Compare expression of checked genes

Potri.004G202683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.