Plant FIBer expression Database

Potri.004G203000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52740 90 / 1e-23 unknown protein
AT3G44450 86 / 5e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G164000
[exp]
221 / 4e-75 AT3G52740 95 / 2e-25 unknown protein
Potri.004G202900
[exp]
115 / 2e-33 AT3G52740 100 / 1e-27 unknown protein
Potri.009G163900
[exp]
110 / 6e-32 AT3G52740 101 / 7e-29 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004872
[exp]
97 / 2e-26 AT3G52740 102 / 6e-29 unknown protein
Lus10020614
[exp]
80 / 1e-19 AT3G52740 103 / 2e-29 unknown protein
Lus10014197
[exp]
79 / 1e-18 AT3G52740 87 / 2e-22 unknown protein
Lus10021366
[exp]
77 / 2e-18 AT3G52740 91 / 1e-23 unknown protein
Lus10017046
[exp]
77 / 4e-18 AT3G52740 94 / 6e-25 unknown protein
Lus10022717
[exp]
68 / 6e-15 AT3G52740 76 / 3e-18 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G203000.1 pacid=42796256 polypeptide=Potri.004G203000.1.p locus=Potri.004G203000 ID=Potri.004G203000.1.v4.1 annot-version=v4.1
ATGGAGGGCATGCACTTGTCATCTATGAAACAAGAACCCTCCTCCAATCCAGGAAAACCCACGACTAGGAATATTGCATTTTCTTGGCAACCAAAGTCAC
CTTCTAGGGCAGAACCCTCGCAAATCATGAACAAAGCACAAACATGGTGTTCTTATCCTGGAGTGGAGAATGTTGGGAATGAAGTGAAAGAGCAGGCAGC
CGAGGCATTGATTTTAATGCACAGAGAAAGTGTTACTCTTACTACTACTACTACTACAGGACGTGAGAGACTAAAGAGGCATAGAGAAGAGGTGAGTGGC
AAGGTGATGATTCCGGATACATGGGGTCAAGAAAATTTGCTTACAGATTGGATTGATTATTCATCATTTGACAAGCTGTTAGCCCCAAAAGGAATCACAT
CAGCTCGTGAAGCACTTGTCGCTGAGGGACGTAGAGCCAGAACTTCTCATCAACGATTGGGAGTAGAAAGTAGCTGTTAA
AA sequence
>Potri.004G203000.1 pacid=42796256 polypeptide=Potri.004G203000.1.p locus=Potri.004G203000 ID=Potri.004G203000.1.v4.1 annot-version=v4.1
MEGMHLSSMKQEPSSNPGKPTTRNIAFSWQPKSPSRAEPSQIMNKAQTWCSYPGVENVGNEVKEQAAEALILMHRESVTLTTTTTTGRERLKRHREEVSG
KVMIPDTWGQENLLTDWIDYSSFDKLLAPKGITSAREALVAEGRRARTSHQRLGVESSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52740 unknown protein Potri.004G203000
[exp]
0 1
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G174202
[exp]
3.16 0.9928
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G172100
[exp]
4.47 0.9898
AT3G44610 Protein kinase superfamily pro... Potri.009G146500
[exp]
5.91 0.9816
AT5G20190 Tetratricopeptide repeat (TPR)... Potri.018G130100
[exp]
6.00 0.9414
AT5G16340 AMP-dependent synthetase and l... Potri.013G096200
[exp]
6.32 0.9804
AT4G27030 FADA, FAD4 FATTY ACID DESATURASE 4, fatty... Potri.001G424700
[exp]
8.06 0.9736
AT3G05880 RCI2A RARE-COLD-INDUCIBLE 2A, Low te... Potri.013G001600
[exp]
8.48 0.9562 Pt-RCI2.1
AT3G56290 unknown protein Potri.019G056400
[exp]
8.77 0.9770
AT5G50210 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEAT... Potri.015G085300
[exp]
9.89 0.9731
Potri.012G071450
[exp]
10.19 0.9261

Potri.004G203000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.