Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08350 672 / 0 Endomembrane protein 70 protein family (.1.2) AT2G01970 594 / 0 Endomembrane protein 70 protein family (.1) AT5G37310 575 / 0 Endomembrane protein 70 protein family (.1) AT1G14670 571 / 0 Endomembrane protein 70 protein family (.1) AT1G10950 311 / 3e-98 AtTMN1 transmembrane nine 1 (.1) AT3G13772 279 / 2e-85 AtTMN7 transmembrane nine 7 (.1) AT2G24170 270 / 3e-82 Endomembrane protein 70 protein family (.1) AT1G55130 269 / 8e-82 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G10840 263 / 2e-79 Endomembrane protein 70 protein family (.1) AT5G25100 259 / 4e-78 Endomembrane protein 70 protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G075450 [exp] 588 / 0 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 580 / 0 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 580 / 0 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 488 / 3e-167 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075525 [exp] 338 / 3e-112 AT5G37310 523 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G015300 [exp] 341 / 9e-110 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.004G218300 [exp] 330 / 2e-105 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.003G038700 [exp] 283 / 3e-87 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G184200 [exp] 273 / 4e-83 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004873 [exp] 702 / 0 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10031308 [exp] 591 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 589 / 0 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042286 [exp] 582 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 478 / 4e-161 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10001368 [exp] 324 / 2e-103 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10001291 [exp] 317 / 1e-100 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 311 / 6e-97 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 291 / 4e-91 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10037643 [exp] 286 / 3e-88 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.004G203200.1 pacid=42795069 polypeptide=Potri.004G203200.1.p locus=Potri.004G203200 ID=Potri.004G203200.1.v4.1 annot-version=v4.1 ATGAGCTCCCTTTTAGTCCTCTTTATTATTCTAGCCTTCTCTTTTGGATTCTCTGCCTCTTCACCATCCAATCACCGCTACAATGCTGGAGATCATGTCC CTTTGTTTGTTAACAAAGTGGGTCCATTGCACAATCCCAGTGCGACTTACTGGTACTATGACTTGCCATTTTGCCATCCAGATAATATAATCCTAAAGCA GGAAACACTCGGGGAAGTGCTGAATGGTGATCGTTTGAGTAGTGGTTTGTATGAGCTGAAATTCAGGGAGGACAAAACTGGGGTGACCCTTTGTGACAAG AGGCTTAAAGGATATGAAGTTGCTAGGTTTAGAGATGCTGTCATTGATGATTTTTACTTCCAAATGTACTACGACGATCTTCCATTATGGGGTTTTGTTG GGAAAATTGAAGAGCAAAGTTGGGTCCTTGGAGAGAAGAAGTTCAACTATTATCTGTTCAAACACGTGCAGTTTGATGTTCTTTATAATGACAACCAAGT CATAGAAATAAGTGCTTTTAGTGACCCTGACCATGCTGTCGATATAACTGATGATGTTGATATGGATGTGAAGTTCACTTATTCGGTTTTTTGGAAAGCA ACGTCATCCAAGTTTGAGACCAGGATGGACAAGTACGCAAGGGCTTCGTTGCTTCCTGTACGAAGGCAGATTCGCTGGTTCTCATTCTTTATCTCTATTG CCAACATTGTGCTTTTTACAGGATTACTTATGGTGTTTCTTAAGCGACTTCTTAAGAAGGATCTGGGAAAATTTGCCAGTGGAGATGAAGAAGAAGACAG GGAAGTCGGTTGGAAATACATACATGGTGATGTTTTCAGATACCCTCAAAACATGTCCTTGTTCTGTGCTGTCTTGGGGGTAGGAACTCAACTGCTGACA GTGGTTTTCTTTTTATTTGTTTTGGCATTTGTTGGCATGCTCTACCCCTACAACCGTGGAGCACTGTTCACTTATTTTGTCCTGCTTTATGCACTTTCAT CTGTGGTTGGGGGCTATACCACTGCATCTTTCCATAATCAGTTTTGCGAAACTGGATGGGAAAGGAGTGTACTTCTTAGTGGGATTCTCTACCCAGGTCC ATCATTTGTGATATTGTCCGTTCTCAATACAATTTCTGTATCTTATGGGGCCACGGCATCACTTCCTTTTGGCACCATTCTAGTGATTCTTCTCATATAC ATTTTGTTAGCCATTCCTTTATCTGCCTTTGGAGGGCTGATTGGGCATCGTTTTAGGACTGAATTTCAAGCACCTTCTGCTACAAAAAGTCATCCAAGGG AAATTCCACCATCATCATGGTATAGAAGAACACCTTGTCAAATGTTTATTGGGGGACTCTTGCCTTTTAGTGCAGTTGCCATTGAGTTACATCACTTGTA TGCAAGCTTGTGGGGCTACAAAATATGCACCCTTCCTAGCATTTTGTTTGTCACATTCATCATACTTATCATGCTGACTGCAATCTTGAGTATTGGGATG ACATACATTCAGCTTTCTATGGAAGACCATGAATGGTGGTGGAGATCTCTGTTGTGTGGGGGCTCAGTGGCCATTTTTATGTTTAGCTATGGCATCTACT TCTTTTCCAGGTCAAGCATGAGTGGTTTTATGCAGCTATCCTTCTTCTTTGGCTATAATGCTTGCATGTGCTATGCATTTTTCTTGATAATCGGTACAAT CAGTTTCCGCGCTTCCTTCGCCTTTGTTTGCCACATTTACCACGCTGCTAAGAGTGAATGA
AA sequence Show only first row Show all	>Potri.004G203200.1 pacid=42795069 polypeptide=Potri.004G203200.1.p locus=Potri.004G203200 ID=Potri.004G203200.1.v4.1 annot-version=v4.1 MSSLLVLFIILAFSFGFSASSPSNHRYNAGDHVPLFVNKVGPLHNPSATYWYYDLPFCHPDNIILKQETLGEVLNGDRLSSGLYELKFREDKTGVTLCDK RLKGYEVARFRDAVIDDFYFQMYYDDLPLWGFVGKIEEQSWVLGEKKFNYYLFKHVQFDVLYNDNQVIEISAFSDPDHAVDITDDVDMDVKFTYSVFWKA TSSKFETRMDKYARASLLPVRRQIRWFSFFISIANIVLFTGLLMVFLKRLLKKDLGKFASGDEEEDREVGWKYIHGDVFRYPQNMSLFCAVLGVGTQLLT VVFFLFVLAFVGMLYPYNRGALFTYFVLLYALSSVVGGYTTASFHNQFCETGWERSVLLSGILYPGPSFVILSVLNTISVSYGATASLPFGTILVILLIY ILLAIPLSAFGGLIGHRFRTEFQAPSATKSHPREIPPSSWYRRTPCQMFIGGLLPFSAVAIELHHLYASLWGYKICTLPSILFVTFIILIMLTAILSIGM TYIQLSMEDHEWWWRSLLCGGSVAIFMFSYGIYFFSRSSMSGFMQLSFFFGYNACMCYAFFLIIGTISFRASFAFVCHIYHAAKSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	0	1
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014400 [exp]	1.00	0.8530
AT1G67190			F-box/RNI-like superfamily pro...		Potri.009G164200 [exp]	4.69	0.7969
AT5G23340			RNI-like superfamily protein (...		Potri.006G238300 [exp]	6.16	0.7649
AT5G18500			Protein kinase superfamily pro...		Potri.008G214200 [exp]	7.34	0.8186
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124500 [exp]	8.48	0.8116
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Potri.013G077700 [exp]	13.07	0.8030
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.001G455300 [exp]	17.94	0.8049
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.013G117200 [exp]	18.00	0.7953	Pt-SERK2.2
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	18.16	0.8131	Pt-MOR1.1
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.006G237700 [exp]	26.45	0.7463

Compare expression of checked genes

Potri.004G203200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.