Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67190 654 / 0 F-box/RNI-like superfamily protein (.1.2) AT1G10780 47 / 1e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164200 [exp] 757 / 0 AT1G67190 613 / 0.0 F-box/RNI-like superfamily protein (.1.2) Potri.003G019400 [exp] 48 / 1e-05 AT1G10780 586 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.007G045601 [exp] 39 / 0.0007 AT5G67140 151 / 2e-47 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004875 [exp] 648 / 0 AT1G67190 619 / 0.0 F-box/RNI-like superfamily protein (.1.2) Lus10020611 [exp] 641 / 0 AT1G67190 616 / 0.0 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.004G203300.1 pacid=42796276 polypeptide=Potri.004G203300.1.p locus=Potri.004G203300 ID=Potri.004G203300.1.v4.1 annot-version=v4.1 ATGGAACATCTTCCGGTTGAAGTTATTGGGAACATTTTGTCACGGCTAGGAGGCGCTCGGGATGTGGTGATAGCTTCTGCAACATGTCGGAAGTGGCGAG AAGCTTGTCGTAAACACCTTCACACCCTTTCATTCAATTCCAATGATTGGCATGTTTATCATGATCTCACGACTCGTCGGCTAGAGATACTGATAACTCA AACAATATTCCAAACCACTGGATTACAAGGCTTGTCAATTTTGATGGATGATGCTGATGATTTTTCTGCATCAACAGTTATTGCTTGGCTCATGTACACC AGGGAAACCTTGCATCGATTGATTTATAATGTTCGGACTAATCCAAATGTTAATATTCTTGAGATTTGTGGCAGGCAGAAGCTGGAAACTTTGGAATTGT CCCATAACTCGATAACAGGGGTTGAACCCAATTTTCAGAGATTCCCCTGTTTAAAATCCCTTTCTTTGAGTTATGTCAGTATCTCAGCATTGGATCTCAA TCTTTTACTCACTGCTTGCCCAAAGATTGAGACCTTTGGGCTTGTTAATCCAGAGATTGCAATGTCTGATGCACAGGTGACTGTTGAACTGAGCAGCCCA ACATTAAAGAGTGTTTATGTCGAAGCAATTAGTTTGGACAAGTTTATATTGGAAGCAGATAGCATCGAAAGCTTGCACTTGAAGGATTGTGCTCTTGAGC TATTTGAACTCATTGGAAAGGGTACTTTGAAGCATTTCAAAATTGATGACGTGAGTGTTATTCAACTTTATATTGGCGAGACTGTTGATAATCTTGAGAT CATAGATGTCAGCAACTTCACTATTATTTGGCCAAAGTTCTACCAAATGATCTCAAAATCATCAAAGTTAAGGAAACTTCGTCTTTGGGACGTGGTCTTT GACGATGAGGATGAGATTGTGGATTTAGAAAATATTGCTGTTTGTTTCCCGCATCTCAGCCACCTTGCATTAAGTTATGACTTGAGAGATGGAGTGGTCA ACTATGGCCTACAAGGTTCTTCCCACTTGGAATATGTCATTATCTTGGAGCTCGGGTGGACTGTAATTAATGATCTCTTCTCTCTTTGGGTGGAGGGACT GCTAAAACTTTGTCCAAATCTCAAGAAGTTGGTGATTCGTGGTGTTGTTTCAGAGGCCAAAAGTCACGAAGAATGCCAAATGTTGGCCAATTTTACCTCA TCCATGGTTCAGCTCATGAGAACATACATGCATGTAGATGTGCAGTTCGATTATGAATAG
AA sequence Show only first row Show all	>Potri.004G203300.1 pacid=42796276 polypeptide=Potri.004G203300.1.p locus=Potri.004G203300 ID=Potri.004G203300.1.v4.1 annot-version=v4.1 MEHLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLHTLSFNSNDWHVYHDLTTRRLEILITQTIFQTTGLQGLSILMDDADDFSASTVIAWLMYT RETLHRLIYNVRTNPNVNILEICGRQKLETLELSHNSITGVEPNFQRFPCLKSLSLSYVSISALDLNLLLTACPKIETFGLVNPEIAMSDAQVTVELSSP TLKSVYVEAISLDKFILEADSIESLHLKDCALELFELIGKGTLKHFKIDDVSVIQLYIGETVDNLEIIDVSNFTIIWPKFYQMISKSSKLRKLRLWDVVF DDEDEIVDLENIAVCFPHLSHLALSYDLRDGVVNYGLQGSSHLEYVIILELGWTVINDLFSLWVEGLLKLCPNLKKLVIRGVVSEAKSHEECQMLANFTS SMVQLMRTYMHVDVQFDYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67190			F-box/RNI-like superfamily pro...		Potri.004G203300 [exp]	0	1
AT4G12850	FAR1_related		Far-red impaired responsive (F...		Potri.002G239400 [exp]	1.73	0.7703
AT1G47410			unknown protein		Potri.014G032300 [exp]	2.44	0.8295
AT1G47410			unknown protein		Potri.002G127800 [exp]	12.80	0.7709
AT3G47160			RING/U-box superfamily protein...		Potri.011G050700 [exp]	14.14	0.7123
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.005G111600 [exp]	14.89	0.6955
					Potri.014G032100 [exp]	18.33	0.7375
AT3G55060			unknown protein		Potri.008G047200 [exp]	23.83	0.7507
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	24.37	0.6487
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.017G101300 [exp]	29.69	0.7421
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	32.32	0.7457

Compare expression of checked genes

Potri.004G203300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.