Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08320 571 / 0 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06950 322 / 5e-107 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 320 / 1e-106 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06960 310 / 1e-102 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G06839 308 / 9e-100 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G68640 278 / 1e-88 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G65210 270 / 4e-86 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G77920 270 / 4e-86 bZIP bZIP transcription factor family protein (.1) AT5G10030 270 / 4e-86 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G22070 268 / 2e-85 bZIP TGA3 TGA1A-related gene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164300 [exp] 821 / 0 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 347 / 1e-114 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G058800 [exp] 343 / 5e-113 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.001G029800 [exp] 337 / 3e-111 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.016G036500 [exp] 334 / 5e-110 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 333 / 4e-109 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 330 / 3e-108 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 318 / 6e-104 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.005G170500 [exp] 283 / 2e-91 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004876 [exp] 617 / 0 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 615 / 0 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 491 / 3e-171 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 451 / 5e-156 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10026166 [exp] 339 / 8e-114 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 338 / 3e-113 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 332 / 5e-111 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10023822 [exp] 316 / 2e-102 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10009055 [exp] 284 / 9e-92 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10041475 [exp] 275 / 1e-86 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF14144 [poplar] [flax] DOG1 Seed dormancy control
Representative CDS sequence Show only first row Show all	>Potri.004G203400.7 pacid=42794436 polypeptide=Potri.004G203400.7.p locus=Potri.004G203400 ID=Potri.004G203400.7.v4.1 annot-version=v4.1 ATGGCTAGCCACAGAGTTGGAGAGACTGGTTTATCATCAGTTCCCTCGAATCACCATCTCCCTTATGCACCTGTTCATGGAATCAACACCCCATCAGCCA ATTTCATTAATCAAGAAGGATCTGCTTTTGATTTTGGAGAGCTGGAAGAAGCGATTGTGCTGCAAGGAGTTCAGATTAGGAATGATGAAGCTAAAGCACC TTTATTTACAGTAGCAGGCAGACGTGCAGCAACACTGGAAATGTTCCCTTCATGGCCAATTAGATTCCAGCAAACCCCAAGAGTAGGAAGTTCAAAGTCA GGAGGGGAGAGTACTGACTCAGGCTCAGCAACAAACACTCTTTCAAGCAAAGCTGATGCCCATCTGGAACCGGAATCTCCCATCAGTAAAAAGGCATCTT CCTCGGATCATTACAATCAGGCTTTTGATCAGAAGCATCTACAGTTTCAAGATCAGCAACAAGTAGATATGGCTAATGATACATCAAGAACAGGAGGACG ACCCTCTCAACAGAATCAATCACCTGCCAAAACTCCCCATGAAAAGAGAAAAGTTTCAACATCAGAGAAACCACTTGATGCTAAGACATTGAGACGATTA GCTCAAAACAGAGAAGCTGCAAGGAAGAGTCGACTGAGGAAGAAGGCATATGTCCAACAGCTAGAGACTAGCAGAATAAAGCTTTCTCAGTTAGAGCAAG ATCTTCAAAGAGCTAGACAGCAGGGTTTATTCTTGGGTGGCTGTGGTGGTGCTGGTGGCAATATCAGCTCTGGACCTGCAATATTTGATATGGAGTATGC AAGATGGCTAGAAGATGACCACCGGCACATGTCGGAGCTCCGGACAGGATTGCATTCTCATTTATCTGATGGTGAACTACGAGTTATAGTAGATGGATAC ATTTCACATTATGATGAAATTTTCCGGCTCAAGGTAGAGGCGGCTAAATCTGATGTGTTTCATCTCATTACCGGAATGTGGTCCACTCCGGCGGAGCGTT GCTTCCTCTGGATGGGTGGTTTTAGGCCCTCAGAACTCATAAAGATGTTAATATCCCAACTAGACCCTTTAACAGAACAGCAAATCATGGGGATCTACAA CCTTCAACAATCTTCACAGCAGGCAGAAGAGGCTCTCTCCCAAGGCCTTGAGCAGCTCCAGCAGTCTCTGGTTGACACCATTGCCGGTGGACCGGTCATT GGTGGAATGCAGCAGATGGCAGTGGCCTTGGGCAAGCTTGCCAATCTTGAAGGGTTCGTTCGCCAGGCTGATAATCTGAGGCAACAAACCCTTCACCAAC TCCGCCGGATTTTGACGGTAAGACAGGTGGCGCGGTGTTTTTTGGTGATCGGAGAGTATTATGGGAGGCTACGGGCACTTAGTTCCCTATGGGCATCTCG TCCTAGAGAGACAATGATGAGTGAAGATAACTCATGCCAAACCACCACTGATCTTCAAATGGTGCACCCTTCACAGAATCATTTCGCCAACTTTTAA
AA sequence Show only first row Show all	>Potri.004G203400.7 pacid=42794436 polypeptide=Potri.004G203400.7.p locus=Potri.004G203400 ID=Potri.004G203400.7.v4.1 annot-version=v4.1 MASHRVGETGLSSVPSNHHLPYAPVHGINTPSANFINQEGSAFDFGELEEAIVLQGVQIRNDEAKAPLFTVAGRRAATLEMFPSWPIRFQQTPRVGSSKS GGESTDSGSATNTLSSKADAHLEPESPISKKASSSDHYNQAFDQKHLQFQDQQQVDMANDTSRTGGRPSQQNQSPAKTPHEKRKVSTSEKPLDAKTLRRL AQNREAARKSRLRKKAYVQQLETSRIKLSQLEQDLQRARQQGLFLGGCGGAGGNISSGPAIFDMEYARWLEDDHRHMSELRTGLHSHLSDGELRVIVDGY ISHYDEIFRLKVEAAKSDVFHLITGMWSTPAERCFLWMGGFRPSELIKMLISQLDPLTEQQIMGIYNLQQSSQQAEEALSQGLEQLQQSLVDTIAGGPVI GGMQQMAVALGKLANLEGFVRQADNLRQQTLHQLRRILTVRQVARCFLVIGEYYGRLRALSSLWASRPRETMMSEDNSCQTTTDLQMVHPSQNHFANF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	0	1
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	3.00	0.8556
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	4.24	0.8341
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.004G105700 [exp]	4.24	0.8538
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.013G041000 [exp]	4.47	0.8459
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	5.09	0.8546
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	6.92	0.7924
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	7.48	0.8258
AT1G22930			T-complex protein 11 (.1.2)		Potri.003G018500 [exp]	7.48	0.7939
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	7.93	0.8220
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	8.30	0.7730

Compare expression of checked genes

Potri.004G203400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.