Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22450 958 / 0 unknown protein AT2G19390 296 / 1e-82 unknown protein AT4G29790 283 / 2e-78 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164400 [exp] 1934 / 0 AT5G22450 952 / 0.0 unknown protein Potri.010G238400 [exp] 795 / 0 AT5G22450 513 / 8e-161 unknown protein Potri.008G020600 [exp] 781 / 0 AT5G22450 543 / 2e-172 unknown protein Potri.006G146600 [exp] 343 / 1e-98 AT2G19390 1068 / 0.0 unknown protein Potri.018G056400 [exp] 307 / 3e-86 AT2G19390 1022 / 0.0 unknown protein Potri.006G146700 [exp] 68 / 2e-12 AT4G29790 203 / 2e-60 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004878 [exp] 1298 / 0 AT5G22450 916 / 0.0 unknown protein Lus10020607 [exp] 1293 / 0 AT5G22450 916 / 0.0 unknown protein Lus10000530 [exp] 71 / 2e-13 AT5G22450 71 / 3e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G203500.6 pacid=42795653 polypeptide=Potri.004G203500.6.p locus=Potri.004G203500 ID=Potri.004G203500.6.v4.1 annot-version=v4.1 ATGTTAAATTCCGGGAATAATTTAAATCAAGGAAGTTCCGCAATGTCACCGGATATGCCACCAGTTACACAATGTGTGCCTTTGGAGCCTATTACGTTAG GCAATCAGAGATATACGCGGTCTGGAGAGGTGAGGAGGGTTTTGGGAGTTCCTCTTGGTAGTGTGTCAGAGGATCATTCGTTTGGAGTTGCGCATCCCAA GCCGATGCCTCCAGTGGCAACGGAGGAGCTAAAGCAATTTAAAGAAAGCGTGCAAGATACTTCTAGAAAGGCCAAGGACAGAGCAAAACTGTTGCGTGAA TCCTTATCTAAATTGGAAAGGTACAGGGTAGCCTTAAGCTCAAAGAAGCGGCAAAGGAGTGAGCCTTCATTGAATGAGAGGTCAAATTTAGCGAACGTAG CAAAGGTGGCAGGTCAGATTCATAGAAATCCTCATGATATTATGACTCAAAGATTGGAGGACAGGACCAAGAGTACTGGGCTTAACAAGCGTGCTCGGAC TTCAGTGGCTGATGTGCGGGCAGATGGTAGGTCCTCGGTGCACTCAAGGCAACATATGGTAATGGATAAGAGTGGAGATATGGTCCAGGATCTTGGTGGT GGTGCTGTTCGGTATGAAGAAAAGATCCGCAGATTGCCTGCTGGAGGTGAAGGGTGGGATACAAAAAATAAAAAGAAACGTTCTGTTGGAGTGATGGGTA ATAGAGTTATAAACGGTGATCGAGAACAAAAACGAACTATGCCTTCCAAGATGAGTGCCGACTCTAAGTTGCGATCATGTGATGCTCAGGGTTTCAGATC AAAGTCATCTGCTGGAGTCAGTGGATTCAACAAGTTGGAAGGTTCTTTTGAACCTACCAGTTCAGATACCAGTACAGTCGTTAAGAATGAAATGGAAAGT GTTCTTCCAAGAAATCGTATTGCTCTTTTAGAGCATAAGGTTGTGACGAAAGGAACAAATAAGCCAAATATTCACGAGGATAATTCAGCAAGCACTCCTA ATACAGTGATAAAGGCAAAGGTTTCCCGGGCACCGCGTACTGGGTCCATCATGCTGCTAGATTCGTCACTTAAAGTTCAACCCTCACCCACATCCCTTCA AGGTTCGGAACAGCCTACAAGTTCAAATAAAATCCAACTGCCAGGAGTGGTAAATAACCATAAGGGTCAAATGCCAGCAGGCTCATCCTCACATGCTATG GCTCAGTGGGTTGGTCAGAGACCACACAAAAACTTACGCACACGGAGGGCAAATATAATGGCTCCTAGTTCAAACCATATTGAATCTCAGATGTCATCTC AAGGTTTTCCCACTTCTGAATTTAGTGCTAGAACTTCTTCCATTGGAACCAAAGGATCTCTGATTGCCAGCAATCTAGATACCAACACTCCAAAATTCAA GAGGGAACTTGAGAGTGTTCCATCTCCATTTGGGTTGTCTGAAAGTGAAGAATCGGGAGCTGGAGAGAATAAACCAAAGGACAAAGGAACAGATGGTAGC GAGGTTTCTCTGTCTGCAAGTCAGAAAGTTGGAACTTTTGTATTGCCTGCTAGGAAGAATAAATCATCAACGAATGAAATTGGGGATGGCGTGCGGAGAC AAGGAAGGAGTGGACGAGGGTCATCTTTAACAAGGCCAGGTACTTATCCAGTAAGGGAGAAGTTAGAGAATCTTCCAGCTGTAAAGCCACTTCAGAGTTC AAAGGCCGCTTCTGATAAGAATAAAAGCAAAACTGGTCGTCCACCTTCCAAAAAGTTGAAAGATCGGAAGGCTGCAGTGCGTGTTGGACCAATGCCCAAC AGCAGTTCCTTAGATTTTACAGGTGAATCTGATGATGATCATGAAGAACTATTTTCAGCTGCCAATTCTGCTCGGAAAGCTAGTGAGCTTGCCTGTTCTG GTCCTTTTTGGAAGAAGATGGACTCTTATTTTGCTCCTGTAAGCTTAGAGGATATGTCCTACTTGAAGCAGGAGCTAACTTCTGCACAAGGGATTGATGA GAGTTTTTCTCAAATGCTTGGCGCAACATATAATGTTTTGGGTGTTCTTGTGCACAAAGAAGTATGTCCTGGCAGAAGACAAGGGGAGGACTTCAATCAA GAATCAGCCAAAACAACTTCTTTATGTGGAAGAGTTGAAATGGGAAGTTTGGACAAGGTCGCTCCATTATACCAAAGAGTTCTTTCTGCTTTAATTGAAG AAGATGAAAGTGAAGAATTTTACACACAAAGTGAAGGGAAGAACATGTCTCTTCACTATGCCAGTGATGATTCTCATTGTGGTTCATGTAATCTGATTGA TATTGAACCTAAAGATAGAGACAGAATGGAATCTGAAGTTGAGTCAAAAGTGAATTTTCAGACACAGAAGAGTTGTTTCTTGGATAGACTTTCATGTGAT AAGAGTGTCGCATCAAATGCAATTGGGAATCCAAGCATGTCCAGTTCGTTGCATAGCAATGAACAGTGGCCAGTAGATGATGACTTTTCACATTCAGATG CCGGGCATGCCAGTGAAATATGTTCAAATGATCCAGGTTCCCTGCAGATTAGAGAAATAAATATGCCTGGCTTTTCTTCCTCTGATGGTCAATATCAGCT GATGTGTTTGGATGATCGGCTTTTACTTGAGCTACAAAGTATTGGTTTATGCCCAGAAACATTGCCTGATCTAGCAGAGGGGGAAGTGATTAATCAAGAT ATAATGGAGCTTAAAGAAGGGCTGCACCAGCAGACTGGAATAATGAAAAACAAGCTAGGGAAACTTGGTAAAGTTGTTCCGAAAGTAAGAGATATGGAAA GAAGGAATGTTGAACAGGTTGCAATGGACCAACTTATTCAGATGGCTTACAGAAAACTACTGGCCTGTCGTGGGAACAATACCTCAAAAAGTACCATCCG CAAGGTTTCAAGGCAAGTTGCATTGGCCTTTAGCAAACGCGCACTTGCTAGATGTCGCAAATTCGAAGATTCTGGCAGCAGTTGTTTTAGTGAGCCTGTG CTACAGGAGATCATATTCTCTGCACCTGCACCTTCATGCAACAATGACGCCAAATCTGTGGACTGTGTTGGCTCAGGAACTGCGAGTAACACTTGTAATG AAGTCTCTAACATTCATGCTGAAGCCAGAGGATCAGGTGCTGTTTCTAGCACTATCGAGAGATACGATTCTCATAGTGACAACTTTGATAGAATTAAGAA GAGGGAAGTGCTTATAGATGATGTTATTGGCAGCGCTTCATCAAGGGTAACATCCACTCTTGACAGTGCTGCTCTTGGTGGAGTAAAGGGTAAGAGAAGT GATAGAGATAGAGAACAGAGCAAGGATAATTCAAGAAGCAATTCTGTTTCTGGGGCCAGTCGCTCATCATTGGATTGCATCAAAGGCGAGTGCAAAACAA AACCAAAGCCCAAGCAAAAGAGTACTCATTTATTGAATTCAGGAAATGGACCTCATGGATCTGCTCATTCAGTAGCTAATGCTAGTAATAAAATAGAGCG CGTGGGGTCAATGTCTCTTGGCAACATTCCTCAGGATGCCCCCAAAGAAGCAAATGAACCGATTGATTTTGCAAACTTGCAGCTGAATGAAATTGATACA ATTGAACTAGGAGTATCTACTGACCTCGATGGGCCTCATGATCTCGGCTCTTGGTTGAATATTGATGAGGATGGATTGCAAGACCATGATTCTATAGGTC TTGAAATACCAATGGATGACCTTACAGAGTTGAGCATGCTTTTGTAA
AA sequence Show only first row Show all	>Potri.004G203500.6 pacid=42795653 polypeptide=Potri.004G203500.6.p locus=Potri.004G203500 ID=Potri.004G203500.6.v4.1 annot-version=v4.1 MLNSGNNLNQGSSAMSPDMPPVTQCVPLEPITLGNQRYTRSGEVRRVLGVPLGSVSEDHSFGVAHPKPMPPVATEELKQFKESVQDTSRKAKDRAKLLRE SLSKLERYRVALSSKKRQRSEPSLNERSNLANVAKVAGQIHRNPHDIMTQRLEDRTKSTGLNKRARTSVADVRADGRSSVHSRQHMVMDKSGDMVQDLGG GAVRYEEKIRRLPAGGEGWDTKNKKKRSVGVMGNRVINGDREQKRTMPSKMSADSKLRSCDAQGFRSKSSAGVSGFNKLEGSFEPTSSDTSTVVKNEMES VLPRNRIALLEHKVVTKGTNKPNIHEDNSASTPNTVIKAKVSRAPRTGSIMLLDSSLKVQPSPTSLQGSEQPTSSNKIQLPGVVNNHKGQMPAGSSSHAM AQWVGQRPHKNLRTRRANIMAPSSNHIESQMSSQGFPTSEFSARTSSIGTKGSLIASNLDTNTPKFKRELESVPSPFGLSESEESGAGENKPKDKGTDGS EVSLSASQKVGTFVLPARKNKSSTNEIGDGVRRQGRSGRGSSLTRPGTYPVREKLENLPAVKPLQSSKAASDKNKSKTGRPPSKKLKDRKAAVRVGPMPN SSSLDFTGESDDDHEELFSAANSARKASELACSGPFWKKMDSYFAPVSLEDMSYLKQELTSAQGIDESFSQMLGATYNVLGVLVHKEVCPGRRQGEDFNQ ESAKTTSLCGRVEMGSLDKVAPLYQRVLSALIEEDESEEFYTQSEGKNMSLHYASDDSHCGSCNLIDIEPKDRDRMESEVESKVNFQTQKSCFLDRLSCD KSVASNAIGNPSMSSSLHSNEQWPVDDDFSHSDAGHASEICSNDPGSLQIREINMPGFSSSDGQYQLMCLDDRLLLELQSIGLCPETLPDLAEGEVINQD IMELKEGLHQQTGIMKNKLGKLGKVVPKVRDMERRNVEQVAMDQLIQMAYRKLLACRGNNTSKSTIRKVSRQVALAFSKRALARCRKFEDSGSSCFSEPV LQEIIFSAPAPSCNNDAKSVDCVGSGTASNTCNEVSNIHAEARGSGAVSSTIERYDSHSDNFDRIKKREVLIDDVIGSASSRVTSTLDSAALGGVKGKRS DRDREQSKDNSRSNSVSGASRSSLDCIKGECKTKPKPKQKSTHLLNSGNGPHGSAHSVANASNKIERVGSMSLGNIPQDAPKEANEPIDFANLQLNEIDT IELGVSTDLDGPHDLGSWLNIDEDGLQDHDSIGLEIPMDDLTELSMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22450			unknown protein		Potri.004G203500 [exp]	0	1
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	1.41	0.8815	Pt-SPY.1
AT1G20670			DNA-binding bromodomain-contai...		Potri.009G167500 [exp]	2.00	0.8684
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	2.23	0.8682
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	2.44	0.8580
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	2.44	0.8687
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	3.46	0.8722
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	5.29	0.8412
AT5G15680			ARM repeat superfamily protein...		Potri.017G106100 [exp]	7.74	0.8382
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	8.83	0.8427	HEN2.1
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	10.19	0.8008

Compare expression of checked genes

Potri.004G203500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.