Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TFL1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27550 286 / 3e-100 ATC centroradialis (.1) AT5G03840 266 / 2e-92 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G62040 225 / 5e-76 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G65480 211 / 2e-70 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 201 / 9e-67 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G18100 173 / 1e-55 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165100 [exp] 332 / 1e-118 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.008G077700 [exp] 219 / 1e-73 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179700 [exp] 214 / 8e-72 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G141300 [exp] 181 / 3e-59 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G041000 [exp] 179 / 8e-58 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 106 / 2e-30 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 105 / 3e-30 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043385 [exp] 279 / 4e-97 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10004886 [exp] 271 / 4e-94 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10020600 [exp] 269 / 2e-93 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10021372 [exp] 264 / 3e-91 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10027442 [exp] 254 / 3e-87 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 245 / 7e-84 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004884 [exp] 224 / 1e-75 AT2G27550 218 / 3e-73 centroradialis (.1) Lus10013532 [exp] 218 / 2e-73 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004452 [exp] 217 / 4e-70 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10019541 [exp] 204 / 5e-68 AT2G27550 188 / 5e-62 centroradialis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [poplar] [flax] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Potri.004G203900.1 pacid=42794255 polypeptide=Potri.004G203900.1.p locus=Potri.004G203900 ID=Potri.004G203900.1.v4.1 annot-version=v4.1 ATGGCAAAGATGTCAGAGCCTCTTGTGGTTGGGAGAGTGATTGGAGATGTTATCGATCATTTCACTGCAAATGTGAAAATGACAGTGACTTATCAGTCCA ACAGGAAGCAGGTTTTTAATGGCCATGAGCTATTCCCATCTGCGGTAACTCATAAACCTAAAGTTGAGGTTCATGGAGGTGATATGAGATCCTTTTTCAC CCTGGTCATGACAGACCCTGATGTTCCTGGTCCTAGTGATCCATACCTCAGGGAGCACCTACACTGGATAGTAACTGACATCCCAGGCACCACAGATGCC ACATTTGGAAGGGAAGTGATGAACTATGAGATGCCAAGGCCTAACATAGGGATCCACAGGTTTGTTTTCCTACTTTTCAAGCAGAAGGGAAGGCAAACAG TGACCACTCCAGCTTCAAGGGACAAATTTAACACCAGGAAATTCGCTGAAGAAAATGAGCTTGGCCTGCCTGTAGCCGCTGTCTTCTTCAATGCCCAAAG GGAAACAGCGGCGAGGAAACGTTGA
AA sequence Show only first row Show all	>Potri.004G203900.1 pacid=42794255 polypeptide=Potri.004G203900.1.p locus=Potri.004G203900 ID=Potri.004G203900.1.v4.1 annot-version=v4.1 MAKMSEPLVVGRVIGDVIDHFTANVKMTVTYQSNRKQVFNGHELFPSAVTHKPKVEVHGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDA TFGREVMNYEMPRPNIGIHRFVFLLFKQKGRQTVTTPASRDKFNTRKFAEENELGLPVAAVFFNAQRETAARKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27550		ATC	centroradialis (.1)		Potri.004G203900 [exp]	0	1	TFL1.2
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.018G033200 [exp]	14.42	0.8988
AT3G52610			unknown protein		Potri.016G078000 [exp]	21.21	0.8917
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G007200 [exp]	25.69	0.8033
AT3G09870			SAUR-like auxin-responsive pro...		Potri.006G125100 [exp]	26.49	0.8833
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.017G081700 [exp]	26.85	0.8800
AT5G35110			unknown protein		Potri.018G113901 [exp]	30.52	0.8832
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.002G060900 [exp]	33.24	0.8818
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152000 [exp]	41.85	0.8769
					Potri.001G387900 [exp]	43.37	0.8767
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Potri.004G051900 [exp]	50.00	0.8763

Compare expression of checked genes

Potri.004G203900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.