Plant FIBer expression Database

Potri.004G204001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G204001.1 pacid=42794174 polypeptide=Potri.004G204001.1.p locus=Potri.004G204001 ID=Potri.004G204001.1.v4.1 annot-version=v4.1
ATGGATGGATGGATGGTGAGGAACTACCCCGTTCAGGACTTGAATTTGCCATTAGATCCTCGGCTTTACTTCTCTCGCGTACAAACGGTCTCAGGCGGTT
TCCTCCTCCTTTGCCTTGACTGCTGCTGCCATCCTGGCTCTTGCTCTCCTTGGCCCAGCTTGCGGTTTTGTTCCGTGGCTCTTGGAGCTCCTCTGATTCG
GGAGTTCCATTTGCCTTTGTTCCCTTTCTTCTCTCTTTTGCCTCACCACGCCAGCTTTTGTACCGCTTTTGGAGCATGCTCTTGTTTCTCTTTCAGCCAT
CTTGGTTCCCAGCAGTATATTCTATCTTATTGTAAAAAAAGACAGTATACAATGGCTCCACACACGGTGGTCGTAGTGGATACGAACATTTACGTACACA
CCGTATAA
AA sequence
>Potri.004G204001.1 pacid=42794174 polypeptide=Potri.004G204001.1.p locus=Potri.004G204001 ID=Potri.004G204001.1.v4.1 annot-version=v4.1
MDGWMVRNYPVQDLNLPLDPRLYFSRVQTVSGGFLLLCLDCCCHPGSCSPWPSLRFCSVALGAPLIREFHLPLFPFFSLLPHHASFCTAFGACSCFSFSH
LGSQQYILSYCKKRQYTMAPHTVVVVDTNIYVHTV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G204001
[exp]
0 1
AT3G10980 SAG20, WI12, AT... PLAC8 family protein (.1) Potri.016G129700
[exp]
29.24 0.6075
AT1G23220 Dynein light chain type 1 fami... Potri.001G401400
[exp]
50.37 0.5854
AT1G21050 Protein of unknown function, D... Potri.002G002000
[exp]
52.76 0.5022
AT2G36985 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL f... Potri.008G035900
[exp]
53.40 0.5150
AT1G08290 C2H2ZnF WIP3 WIP domain protein 3 (.1) Potri.009G143700
[exp]
55.85 0.5183
AT4G23720 Protein of unknown function (D... Potri.003G135400
[exp]
58.99 0.5507
AT1G27990 unknown protein Potri.003G168400
[exp]
96.30 0.5352
Potri.007G115600
[exp]
103.48 0.4956
AT3G07510 unknown protein Potri.014G176000
[exp]
127.33 0.4907
AT1G09870 histidine acid phosphatase fam... Potri.008G072600
[exp]
144.65 0.5068

Potri.004G204001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.