Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SLY1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17980 1012 / 0 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G31740 232 / 5e-73 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G36100 125 / 2e-32 Sec1/munc18-like (SM) proteins superfamily (.1) AT1G02010 102 / 2e-22 SEC1A secretory 1A (.1.2) AT1G12360 97 / 8e-21 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT4G12120 91 / 7e-19 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G77140 77 / 2e-14 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT3G54860 51 / 2e-06 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165300 [exp] 1184 / 0 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 100 / 9e-22 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.014G069300 [exp] 97 / 8e-21 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.003G115800 [exp] 94 / 9e-20 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.005G188000 [exp] 72 / 4e-13 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.002G071600 [exp] 69 / 6e-12 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023936 [exp] 1057 / 0 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 1048 / 0 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10015870 [exp] 94 / 8e-20 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10024558 [exp] 89 / 4e-18 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10032196 [exp] 87 / 1e-17 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10009293 [exp] 84 / 9e-17 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10018921 [exp] 72 / 6e-13 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10028622 [exp] 72 / 6e-13 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [poplar] [flax] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Potri.004G204400.1 pacid=42795157 polypeptide=Potri.004G204400.1.p locus=Potri.004G204400 ID=Potri.004G204400.1.v4.1 annot-version=v4.1 ATGGCTCTCAATCTGCGTCAAAAACAAACAGAATGTATAATCCGGATGCTAAATCTGAACCAACCTTTGAATGCAACTGGTACTACTAATGAAGAGGTTT ACAAGATCTTGATCTATGATAAGTTTTGTCAAAATATACTATCTCCATTGATTCATGTCAAGGATCTGAGAAAACATGGGGTTACTCTTTATTTCCTTAT TGATAAGGATCGAAAGCCTGTCCATGATGTCCCTGCTGTGTACTTTGTTCAACCAAGTAAAGTTAATGTTCAGAGGATTGTTGCTGATGCGTCACAATCG CTTTATGATAGCTTCCACCTGAATTTTTCGTCGTCCATTCCTCGTCCACTTCTTGAGGATCTTGCATCTGGGACATTGAATTCAGAGTCTATAGATAAGA TTTCAAAGGTGCATGATCAGTATTTGGAGTTTGTGACTTTGGAGAATAATTTGTTTTCGTTGGCACAGAAGTCTTGCTATGTTCAGTTGAATGATCCGTC TGCTGGTGATAGAGAGATTGAGGAGATTGTTGAGAAGGTTGCTAGTGGGTTATTTTCTGTGTTGGCAACACTTGCGGTTGTGCCAGTTATTAGGTGTCCG CGTGGTGGCCCAGCAGAGATGGTGGCATCAGTGCTGGATCAGAAGTTGAGGGATCATTTATTGTCGAAGAACAATTTGTTTACAGAAGGTGGGGGTTTTG CGAGCTCTTTTCAGAGGCCAGTTTTGTGTCTATTTGATCGGAATTTTGAATTGTCAGTGGGAATACAGCATGATTTTAGGTATCGTCCTCTTGTTCATGA TGTTCTTGGCTTGAGGCTTAATAGGTTGAGTGTGCAAGGGGAAAAGGGTGGGATGAGGTCATATGAGTTGGACAGTTCTGATCCATTTTGGGTGGCAAAT GGGTCTCTAGAGTTTCCTGAAGTTGCAGTGGAAATTGAGACTCAGTTGAACAAGTACAAGAAGGATGTTGATGAGGTGAATAGGAGGACTGGAGAAACTG ATGGGGCTGAATTTGACGGGACGGATTTGATCGGGAACACAAAGCATTTGATGAATGCTGTGAACTCCCTGCCTGAACTGACAGAACGGAAGCAGGTGAT TGATAAACACACGAACATTGCAACTGTTTTGTTGGGTGAGATCAAGGAGAGGTCTCTTGATTCCTATGCGAAAAAAGAGAATGACATGATGGTCAGAGGA GGGATTGATCGGAATGAACTTTTGGGTGTGCTTAGAGGGAAAGGAACCAAGATTGATAAACTTAGATTTGCAATCATTTACCTTATATGTTCTGAAAGTA TTAATCAATCAGAAGTGGAAGCAATTGAAACTGCTCTTAGGGAGTCTGAGGTTGATAATTGTGCATTCCAGTACGTGAAGAAAATGAAGTCCTTGAATGT TTCATTGGCATCAGCAAATTCTGCCAGTCGAAGTAACATTGTTGATTGGGCTGAAAAACTTTATGGGCAGTCAATTAGTGCTGTGACAGCTGGCGTGAAG AATTTATTATCTAGTGATAGACAGCTGGCATTAACGAGGACTGTGGAAGCTTTGATGGAGGGGAAGCCAAATCCTGAAGTTGATTCTTACCTTGTGTTTG ATCCACGTGCTCCCAAGTCAGGTTCTGGTACCAGTAGCAGCCATCTGAAAGGGCCATTTAAAGAAGCTATAGTGTTTATGATTGGTGGTGGTAATTATAT GGAGTATGGCAGCTTGCAAGAATTTGCACAGCGTCAGCAGCCTGTCAAGCATGTTATATATGGAACAACAGAGATTCTCACAGGAATGGAGTTTGTTGAG CAGCTTACAGTGTTGGGACAGAAGATGGGATTGGGTAGTAGTGTTGCTCCCCCTGCTCCAACCCACTAG
AA sequence Show only first row Show all	>Potri.004G204400.1 pacid=42795157 polypeptide=Potri.004G204400.1.p locus=Potri.004G204400 ID=Potri.004G204400.1.v4.1 annot-version=v4.1 MALNLRQKQTECIIRMLNLNQPLNATGTTNEEVYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPSKVNVQRIVADASQS LYDSFHLNFSSSIPRPLLEDLASGTLNSESIDKISKVHDQYLEFVTLENNLFSLAQKSCYVQLNDPSAGDREIEEIVEKVASGLFSVLATLAVVPVIRCP RGGPAEMVASVLDQKLRDHLLSKNNLFTEGGGFASSFQRPVLCLFDRNFELSVGIQHDFRYRPLVHDVLGLRLNRLSVQGEKGGMRSYELDSSDPFWVAN GSLEFPEVAVEIETQLNKYKKDVDEVNRRTGETDGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRG GIDRNELLGVLRGKGTKIDKLRFAIIYLICSESINQSEVEAIETALRESEVDNCAFQYVKKMKSLNVSLASANSASRSNIVDWAEKLYGQSISAVTAGVK NLLSSDRQLALTRTVEALMEGKPNPEVDSYLVFDPRAPKSGSGTSSSHLKGPFKEAIVFMIGGGNYMEYGSLQEFAQRQQPVKHVIYGTTEILTGMEFVE QLTVLGQKMGLGSSVAPPAPTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.004G204400 [exp]	0	1	SLY1.1
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.001G090300 [exp]	2.44	0.8853
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Potri.009G165300 [exp]	3.31	0.8620	SLY1.2
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.008G208000 [exp]	8.00	0.8862
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.005G100800 [exp]	12.16	0.8759
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	13.15	0.8899
AT5G42090			Lung seven transmembrane recep...		Potri.001G083100 [exp]	25.39	0.7821
AT4G01400			unknown protein		Potri.002G179600 [exp]	32.61	0.8635
AT4G24130			Protein of unknown function, D...		Potri.001G084200 [exp]	37.58	0.8634
AT1G12310			Calcium-binding EF-hand family...		Potri.003G115000 [exp]	42.82	0.8662
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Potri.001G147000 [exp]	43.82	0.8473

Compare expression of checked genes

Potri.004G204400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.