Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38360 713 / 0 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT1G77220 465 / 6e-161 Protein of unknown function (DUF300) (.1) AT1G23070 314 / 5e-103 Protein of unknown function (DUF300) (.1) AT5G26740 144 / 7e-38 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 137 / 1e-35 Protein of unknown function (DUF300) (.1) AT4G21570 110 / 6e-27 Protein of unknown function (DUF300) (.1) AT1G11200 109 / 9e-27 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165600 [exp] 840 / 0 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.002G071400 [exp] 473 / 3e-164 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G188200 [exp] 469 / 1e-162 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.018G062600 [exp] 324 / 7e-107 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000600 [exp] 145 / 2e-38 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.001G405700 [exp] 105 / 3e-25 AT4G21570 421 / 2e-149 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 99 / 6e-23 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1) Potri.004G035900 [exp] 99 / 9e-23 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1) Potri.005G000300 [exp] 91 / 3e-20 AT3G05940 311 / 2e-105 Protein of unknown function (DUF300) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022625 [exp] 290 / 2e-96 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10022626 [exp] 257 / 1e-83 AT4G38360 319 / 2e-108 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10003321 [exp] 256 / 9e-81 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10018920 [exp] 193 / 3e-56 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 192 / 2e-55 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10001058 [exp] 140 / 2e-36 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 140 / 2e-36 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10036614 [exp] 124 / 8e-32 AT1G23070 184 / 2e-55 Protein of unknown function (DUF300) (.1) Lus10035832 [exp] 117 / 6e-29 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1) Lus10018447 [exp] 108 / 4e-26 AT4G21570 464 / 1e-166 Protein of unknown function (DUF300) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [poplar] [flax] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Potri.004G204600.2 pacid=42793977 polypeptide=Potri.004G204600.2.p locus=Potri.004G204600 ID=Potri.004G204600.2.v4.1 annot-version=v4.1 ATGCTTCATGATTGTGAGCATTTGAGAGAAGAAAGTCAGGCCATGGAGTATTTACAGGATCTTATAGTTTATCTTCTTATAAGATTCTCAACTCCCTTAT GGAGTACTTTGATTTCTGGTGCTTTTGTACTTATAAGCTTGTCTTTGTCTTTCTACCTCTTGTTCGAGCATCTCTCCGCGTACAAGAATCCTGAGGAGCA GAAGTTTTTAATTGGGGTTATCCTTATGGTTCCTTTTTATGCTGTAGAATCGTTTGTGTCGTTGCTGGATCCGTCGATTAGTGTTGATATTGAGATATTG CGGGATTGCTATGAATCGTTTGCTATGTATTGCTTTGGAAGATACCTTGTTGCTTGCTTAGGTGGGGAAGAAAGAACAATTGAGTTTTTGAAAAGAGAAG GTCGCTCGAGTTCTAAGGCACCCCTTTTAGAGCATAGTCATGAAAGGGGAACCATAAAGCACCCTTTTCCAATGAACTATATCCTTAAACCATGGAGGCT TGGTCAGTGGTTTTACCAAGTCGTAAAGTTCGGTATTGTTCAATATATGTTAATAAAGTCCTTGACAGCAGTTTTAGCTGTAATTCTTGAAGCCTTTGGT GTATATTGTGAAGGAGATTTTAAATTGAAATGCGGGTATCCTTACATAGCGGTTATTCTAAATTTCAGTCAATCTTGGGCTTTGTACTGTTTGGTGCAAT TTTACACTGCCACAAAGGATGAACTTGCTCACATAAAACCTTTATACAAGTTCCTGACGTTTAAATCAATTGTATTTTTGACCTGGTGGCAAGGAGTGGC AATTGCTCTGCTCTGTTCTCTTGGTTTATTCAAAAGTTCTATAGCTCAAGGTCTGCAGTTTAAGTCAAGTCTTCAAGACTTCATCATTTGTATAGAGATG GGCATTGCTTCTATTGTTCATCTGTATGTGTTCCCTGCCAAGCCTTATGAGCTAATGGGAGACCGGTTTCCTGGAAGTGTTTCAGTTCTTGGAGATTATG CATCTGTTGATTGCCCTATAGATCCTGATGAGGTTAGAGACAGTGAGCGGCCAACAAAGTTACGCCTTCCTCAACCTGACATTGATGTTAGGAGTGGAAT GACTATAAAAGAAAGTGTCCAAGATGTTGTTGTTGGTGGTGGTGGATTTATTGTGAATGATGTGAAGTTCACTGTAAACCAAGCAGTGGAGCCTGTTGAA AAGGGGATTATAAAGTTCAACGAGAAATTGCATAAAATTTCTCAAGATATGAAGAAACACAAGGAAAAGAGAAGAACAAAGGATGATAGTTGCATAGCAA CAGCTTCACCCGCACGGAGGGTCATTCGTGGAATTGATGACCCTCTTTTAAATGGGAGCATCAGTGACACTGGGGTAGCAAGGGGGAAGAAACACCACCG TGGGACATCAGGACATACCAGTGGAGAAAGTGGGGGAGAAAGTAGCAGCGATCAAAGCTATCTCATCAGAGGTCGTAGATGGGTCACTAAAGATTAG
AA sequence Show only first row Show all	>Potri.004G204600.2 pacid=42793977 polypeptide=Potri.004G204600.2.p locus=Potri.004G204600 ID=Potri.004G204600.2.v4.1 annot-version=v4.1 MLHDCEHLREESQAMEYLQDLIVYLLIRFSTPLWSTLISGAFVLISLSLSFYLLFEHLSAYKNPEEQKFLIGVILMVPFYAVESFVSLLDPSISVDIEIL RDCYESFAMYCFGRYLVACLGGEERTIEFLKREGRSSSKAPLLEHSHERGTIKHPFPMNYILKPWRLGQWFYQVVKFGIVQYMLIKSLTAVLAVILEAFG VYCEGDFKLKCGYPYIAVILNFSQSWALYCLVQFYTATKDELAHIKPLYKFLTFKSIVFLTWWQGVAIALLCSLGLFKSSIAQGLQFKSSLQDFIICIEM GIASIVHLYVFPAKPYELMGDRFPGSVSVLGDYASVDCPIDPDEVRDSERPTKLRLPQPDIDVRSGMTIKESVQDVVVGGGGFIVNDVKFTVNQAVEPVE KGIIKFNEKLHKISQDMKKHKEKRRTKDDSCIATASPARRVIRGIDDPLLNGSISDTGVARGKKHHRGTSGHTSGESGGESSSDQSYLIRGRRWVTKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Potri.004G204600 [exp]	0	1
AT5G67140			F-box/RNI-like superfamily pro...		Potri.007G045601 [exp]	1.73	0.8595
					Potri.006G001701 [exp]	8.24	0.7985
AT3G47570			Leucine-rich repeat protein ki...		Potri.013G020900 [exp]	8.48	0.8236	Pt-RGA.59
AT2G25640			SPOC domain / Transcription el...		Potri.018G125500 [exp]	8.77	0.8421
AT1G72040			P-loop containing nucleoside t...		Potri.019G081600 [exp]	12.96	0.8444
AT2G15890		MEE14	maternal effect embryo arrest ...		Potri.009G108200 [exp]	15.23	0.8381
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	16.85	0.8652
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	21.42	0.8244
AT5G27710			unknown protein		Potri.013G017100 [exp]	21.90	0.8080
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	22.04	0.8372

Compare expression of checked genes

Potri.004G204600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.