Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17200 426 / 2e-143 DSK2 ubiquitin family protein (.1) AT2G17190 409 / 4e-137 ubiquitin family protein (.1) AT5G42220 63 / 4e-10 Ubiquitin-like superfamily protein (.1) AT5G25270 50 / 2e-06 Ubiquitin-like superfamily protein (.1) AT1G23410 47 / 4e-06 Ribosomal protein S27a / Ubiquitin family protein (.1) AT2G36170 46 / 6e-06 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 46 / 6e-06 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT3G62250 47 / 7e-06 UBQ5 ubiquitin 5 (.1) AT2G47110 47 / 7e-06 UBQ6 ubiquitin 6 (.1.2) AT4G02890 47 / 1e-05 UBQ14 Ubiquitin family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166000 [exp] 610 / 0 AT2G17200 547 / 0.0 ubiquitin family protein (.1) Potri.005G100200 [exp] 447 / 5e-152 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.005G247900 [exp] 65 / 1e-10 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.002G013500 [exp] 57 / 3e-08 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.006G059700 [exp] 55 / 1e-07 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.018G115500 [exp] 54 / 3e-07 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.016G077000 [exp] 46 / 5e-06 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.005G096700 [exp] 47 / 6e-06 AT1G31340 270 / 2e-94 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) Potri.016G077200 [exp] 46 / 6e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014433 [exp] 428 / 1e-144 AT2G17200 567 / 0.0 ubiquitin family protein (.1) Lus10023934 [exp] 411 / 5e-138 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10034563 [exp] 60 / 2e-09 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10040001 [exp] 55 / 1e-07 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 55 / 2e-07 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10008873 [exp] 46 / 6e-06 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10021830 [exp] 50 / 7e-06 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10030894 [exp] 46 / 1e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 46 / 1e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10018367 [exp] 47 / 2e-05 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Potri.004G205100.1 pacid=42796285 polypeptide=Potri.004G205100.1.p locus=Potri.004G205100 ID=Potri.004G205100.1.v4.1 annot-version=v4.1 ATGGGAGGTGCTGGCGATTCGAGCGAGTCAAAAGTGAGTAATGAACAGGGGCAAGGGCAGGGAGAGGAGGGAGGTGTGGTGATTAACGTTCGGTGCTCTA ATGGTACAAAATTTACTGTGAGGACGAGCCTGGAATCAACGGTTGGGGTTTTCAAATCTGTTCTGGCTCGAAATTGTGATGTTCCAGCTGATCAACAGAG GTTGATTTATAAAGGTCGGATTTTGAAGGATGACCAGACCCTTCTTAGTTATGGTCTGCAAGCTGATCACACCGTTCATATGGTTCGTGGTTTTGCCCCT GCTTCGTCGACTCCTGCTCCTGCTGCTGCTGCCACCGCCACCGCCGCTGCTGGTGGAAATCCTGATACTACAACAGGGGTTACACCGGGTGTTGGTTCTA ATGAAGGTGGGGCTTTTGGACTTGGAGGTGCCGGTTTGGGGGCATCTTTGTTCCCTGGACTTGGGTCACTAGGTGGCGGTGGCGGGGGCGCAACTGGTTC ATTTGGAGCTGGTTTTTCTGAATTGGAACAAGTGCAGCAACGGCTAACTCAGAATCCCAACATGATGAGGGAAATTATGAATACCCCTGCTATGCAGAGT CTGATGAATAACCCCGAGTTGATACGGTCCTTGATGATGAGTAATCCTCAGATGCGCGAGATTATGGACCGGAATCCTGAGCTTGCACATGTGCTTAATG ATCCTAGCATTCTTCGACAGACATTAGAAGCTGCTAGAAACCCTGAGCTCATGCGTGAGATGATGAGACACACTGACAGGGCTATGAGTAATATTGAATC GACTCCTGAAGGATTTAACATGCTCCGGAGAATGTATGAAAATGTTCAAGAACCATTTTTAAATGCTACAACAATGGGTGGAAATGCTGGCAGTGATTTG GGTTCAAATCCATTTGCAGCCCTCCTGGGGAACCAAGGTGGGACTCAGGTCAGGGATGCATCAAACAACCCTTCAACCACTGGTTCTGAAGCAACTGGAG GGCTCACTGCTCCTAATACAAACCCACTGCCCAACCCTTGGAACAATGCTGCTGGAGGTACCCAGACAAACAGTACTACGAGGCCAAATCCTGCTGGGAA TGTGAGGGCCTCAGGTCTTGGTGATTTGGGTCTGGGAGGGCTTGGTCTCCCAGGAATGGAAAGCATGTTTAATGGCATGCCTGATTCTAATCAAATGAAT CAGTTGTTGCAAAATCCAGCTGTATCACAGATGATGCAAACTGTACTCTCCAATCCTGAATACATGAACCAGATGCTCAACTTCAATCCTCAACTACGAA GCATGGTTGATTCAAATCCTCAGTTGAGAGAAATGATGCAAAACCCAGAGCTTCTTCGCCAATTAACTTCTCCCGAAACAATGCAGCAAATGCTCGCTTT ACAACAGTCACTTCTTCCACAGCTCCGACAGCAATCAACCCAGGAAGCGGCACAGCCTGGCGCCCCTACAGGAACACCTAATAATACTGGGCTGGAGATG TTGATGAACATGTTTGGTGGTCTTGGAGCAGGCAGCTTATCTGCACCTAACCAACCTGATGTGCCCCCGGAAGAACTTTATGCAACTCAACTATCACAGC TACAAGAAATGGGTTTCTTTGACACCCAAGAGAATATCAGGGCACTGCGTGCTACAGCTGGAAATGTACATGCTGCAGTAGAGCGTCTTCTGGGGAATCT TGGCCAATGA
AA sequence Show only first row Show all	>Potri.004G205100.1 pacid=42796285 polypeptide=Potri.004G205100.1.p locus=Potri.004G205100 ID=Potri.004G205100.1.v4.1 annot-version=v4.1 MGGAGDSSESKVSNEQGQGQGEEGGVVINVRCSNGTKFTVRTSLESTVGVFKSVLARNCDVPADQQRLIYKGRILKDDQTLLSYGLQADHTVHMVRGFAP ASSTPAPAAAATATAAAGGNPDTTTGVTPGVGSNEGGAFGLGGAGLGASLFPGLGSLGGGGGGATGSFGAGFSELEQVQQRLTQNPNMMREIMNTPAMQS LMNNPELIRSLMMSNPQMREIMDRNPELAHVLNDPSILRQTLEAARNPELMREMMRHTDRAMSNIESTPEGFNMLRRMYENVQEPFLNATTMGGNAGSDL GSNPFAALLGNQGGTQVRDASNNPSTTGSEATGGLTAPNTNPLPNPWNNAAGGTQTNSTTRPNPAGNVRASGLGDLGLGGLGLPGMESMFNGMPDSNQMN QLLQNPAVSQMMQTVLSNPEYMNQMLNFNPQLRSMVDSNPQLREMMQNPELLRQLTSPETMQQMLALQQSLLPQLRQQSTQEAAQPGAPTGTPNNTGLEM LMNMFGGLGAGSLSAPNQPDVPPEELYATQLSQLQEMGFFDTQENIRALRATAGNVHAAVERLLGNLGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.004G205100 [exp]	0	1
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.013G079900 [exp]	1.00	0.8282
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.001G072100 [exp]	2.44	0.8217
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.010G195000 [exp]	5.65	0.7676
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Potri.014G097300 [exp]	7.48	0.8145
AT2G32760			unknown protein		Potri.017G056800 [exp]	16.24	0.7723
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	17.23	0.8212
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	22.58	0.7751
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	23.55	0.7682	MBD5.2,MBD904
AT4G32020			unknown protein		Potri.018G022400 [exp]	23.62	0.7792
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Potri.001G146900 [exp]	25.80	0.7607	Pt-DRT101.2

Compare expression of checked genes

Potri.004G205100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.