Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35280 236 / 1e-76 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G17180 218 / 6e-70 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT1G02040 91 / 1e-20 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G45120 82 / 2e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 79 / 1e-16 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 75 / 4e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 71 / 5e-14 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT1G27730 69 / 2e-13 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT5G04340 68 / 4e-13 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT1G49900 65 / 2e-11 C2H2ZnF C2H2 type zinc finger transcription factor family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166200 [exp] 518 / 0 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.002G143600 [exp] 102 / 4e-24 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.014G066200 [exp] 101 / 7e-24 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.014G066100 [exp] 78 / 7e-16 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 77 / 7e-16 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.002G119300 [exp] 74 / 5e-15 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.003G077200 [exp] 73 / 2e-14 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.014G017300 [exp] 71 / 7e-14 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.004G216900 [exp] 70 / 2e-13 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023932 [exp] 114 / 2e-30 AT4G35280 126 / 2e-35 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Lus10028173 [exp] 112 / 1e-27 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10024763 [exp] 107 / 9e-26 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 107 / 1e-25 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10042872 [exp] 99 / 5e-23 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 84 / 9e-18 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 76 / 2e-15 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10032848 [exp] 74 / 7e-15 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10003463 [exp] 74 / 2e-14 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 72 / 4e-14 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G205300.1 pacid=42794011 polypeptide=Potri.004G205300.1.p locus=Potri.004G205300 ID=Potri.004G205300.1.v4.1 annot-version=v4.1 ATGACAAACCACAATACCGATCCCGACCCTGATTTCGGCCTTCCATCATCTTCTTCAATCCCTACCACATACTACCATCAAAATCCACGTAAAAAACGAA CTAAGTTGATCAAGATTGAACCAAGTTTGCTCCCTTCTAGTACAATATCCAAGCCAAAATATTACAAAAAGCCTGACCCTTCTGCACCAAAGATCACAAG ACCTTGTACTGAGTGTGGCAAGAAGTTTTGGTCCTGGAAAGCACTCTTTGGTCACATGAGATGTCACCCTGAAAGACAGTGGCGTGGCATTAATCCACCT CCCAATTATCGCAGGCCTGTTTCGCCTATTCAACTGTTAAGTATTGTTAGTTCTACTAATTGGGAAGACATGTTGACCGCAGAGGATCATGAGGTGGCTT CATGTTTGTTAATGTTGGCTAATAGTGATGGTGCAATAATGTTGGAGCGTAACGAGTTTGGTGGTGGGGTTGTTGCTGGTAGTTCTCATCAAGCTCAAGA TCATGATCAAGTGAATTGTACTCGTGTCGAGTGTTCGAGTTGTGAGAAGGTTTTTGGGTCACACCTGGCACTAGGGGGTCGTAGGGCCAGTCACAAGAAT GTGAAGGGTTGTTTTGCTATAAAGAGGAATGATGGTTGTGAGGTAGTTGAGGATCATAGTGGGAGTGGTGATGTGAAGGAGAATGTGGAAGATAATAGCA AGGCATTGATGGTGTTAGGGCACAGGTGTAGTATTTGCTCGAGGGTGTTTCCTAGTGGACAGGCACTGGGCGGACACAAGAGGTGCCATTGGGAGAAAGG GGAAGAAATCTCATCATCCATAAATCAAGGAGGACTTCATGTTCTTACAGAAAAGGAAGGTAGTGTGTTGGACCTCAATTTGCCAGCCCCAGTGGAAGAT GAATCATCCTCTTTTTATTCCTCAGGTCTCACTTTGGACTTGAGATTGGGCCTCTGA
AA sequence Show only first row Show all	>Potri.004G205300.1 pacid=42794011 polypeptide=Potri.004G205300.1.p locus=Potri.004G205300 ID=Potri.004G205300.1.v4.1 annot-version=v4.1 MTNHNTDPDPDFGLPSSSSIPTTYYHQNPRKKRTKLIKIEPSLLPSSTISKPKYYKKPDPSAPKITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPP PNYRRPVSPIQLLSIVSSTNWEDMLTAEDHEVASCLLMLANSDGAIMLERNEFGGGVVAGSSHQAQDHDQVNCTRVECSSCEKVFGSHLALGGRRASHKN VKGCFAIKRNDGCEVVEDHSGSGDVKENVEDNSKALMVLGHRCSICSRVFPSGQALGGHKRCHWEKGEEISSSINQGGLHVLTEKEGSVLDLNLPAPVED ESSSFYSSGLTLDLRLGL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35280	C2H2ZnF	DAZ2	DUO1-ACTIVATED ZINC FINGER 2, ...		Potri.004G205300 [exp]	0	1
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	18.70	0.6034
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100800 [exp]	19.33	0.5998
AT5G63380			AMP-dependent synthetase and l...		Potri.017G033600 [exp]	23.06	0.6100
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G029800 [exp]	23.32	0.6083
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G200400 [exp]	23.40	0.6290
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.001G018300 [exp]	48.98	0.5916
AT1G21280			unknown protein		Potri.013G016350 [exp]	59.14	0.5529
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.009G093300 [exp]	61.50	0.5982
AT1G54200			unknown protein		Potri.001G170500 [exp]	70.19	0.5532
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182321 [exp]	74.69	0.5760

Compare expression of checked genes

Potri.004G205300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.