Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NIN.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35270 828 / 0 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 798 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G76350 532 / 3e-176 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 520 / 5e-171 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G38340 292 / 5e-86 NLP3 Plant regulator RWP-RK family protein (.1) AT4G24020 291 / 4e-84 NLP7 NIN like protein 7 (.1) AT1G64530 288 / 6e-84 NLP6 Plant regulator RWP-RK family protein (.1) AT3G59580 247 / 6e-69 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 248 / 7e-69 NLP8 Plant regulator RWP-RK family protein (.1.2) AT5G66990 50 / 3e-06 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166932 [exp] 1413 / 0 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 840 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 837 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 808 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.005G251700 [exp] 758 / 0 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 747 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.001G087900 [exp] 412 / 3e-128 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 409 / 3e-127 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 368 / 6e-112 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014428 [exp] 764 / 0 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 667 / 0 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 434 / 6e-138 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 429 / 8e-136 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 403 / 4e-125 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023049 [exp] 368 / 1e-113 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10019368 [exp] 369 / 7e-113 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 327 / 2e-99 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 323 / 7e-98 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10001811 [exp] 283 / 3e-85 AT1G64530 590 / 0.0 Plant regulator RWP-RK family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G205500.8 pacid=42793849 polypeptide=Potri.004G205500.8.p locus=Potri.004G205500 ID=Potri.004G205500.8.v4.1 annot-version=v4.1 ATGGATGATGGAAATGGTCCTAATTTTATTCCTGATTCTGCTTTCGAGAACTTCTCTGGCTCTTCCATGGACTTGGATTTCATGGATGACCTCCTGTATG AAGGATGTTGGTTGGAGACTGCCGATGAGTTCAACTTTTTGCAGGCTGGTACCATATCCTCTAGTGATCTAAATGACCCTCGGCAATATTTTCCTCTTTT TGAGCCCAACAGCAGTAATTCGAATGTAAATTCTCATCAAGAGAACTATCAAGGTGTGGATGAACTTGGTGGGATTGGATCCCAAAACCAGAATATTCGT TCTTTAGACCAATCCGGAAGTTTTCCAGTTGAGAGCAATGAATTGGGTAGAAGATTGTGGATTGCACCAACTGCAACAGGACCATCTTCTCCGGTAAGAG ACAGATTGATGCATGCCATAGGACAGGTGAAAGAATGCACCAAGGATAGGGATGTCCTTATTCAGATATGGGTTCCGGTGAAGAAAGAAGGCAAGAATGT CCTTACCACTATTGGCCAGCCATACTTGCTCGATCGTAAATGCCAGAGTCTTGCAAGTTACAGAAATGTATCAAAAGACTTTCAGTTCCCAGCAGACGAG GACTCAAAAGAGTTGGTTGGTTTGCCTGGCCGAGTTTTCTTGAGGGAGTTGCCTGAGTGGACTCCAGATGTTCGTTTCTTCAGCGGGGTTGAGTATCTAC GTAAAAACCATGCGAAGCAATTCAATATTAGAGGATCCTTGGCAGTTCCTGTTTTTGAACAGGGCAGCAGGACTTGTTTGGGGGTTATTGAGGTCGTAAC GACCACTCGAGACATCAGTTATCGTCCAGACCTAGAAAATGTCTGCAAAGCTCTTGAGGCTGTTGATCTTAGGAGTCCGCAAGACTTCTGCCCTCCAAGT CTGAAGGTTTGCAAAGAGGTTTGCCAAGCGGCAGCTCCTGAGATATCAAAGATTTTGGAGTCTGTGTGCAAGGCACATAGATTACCTTTAGCCTTAGCGT GGGCCCCATGTTTCCGGGAAGGTAAAGGTGGATGCCGGCATTTTGATGAGAGCTATTCTTATTTCATTTCTTTGGTGAATTCTGCTTACTTTGTAGCTGA GAGAGACGACTGGGGATTCTATATGGCTTGTTCCGAGCAATACCTCTCCTTTGGTCATGGGATTGTTGGAAGAGCATTCGCAACAAACAAACAGTGTCTT TCAACTGACGTAGCAGCCTTTAGCAAGACAGATTATCCACTCTCTCACCATGCTAAAATGTTTGGGTTGCATGCTGCCATAGCCATTCCACTACAAAGCT CCTACGCTGGATCGGCTGATTTTGTCTTGGAGTTATTCTTGCCAAAGGATTGCCGTAACACTGAAGAACAAAAACAAATGTGGGACATATTGCCTATCAC CGTACAACAGGCCTGTCAGAGTTGGCATGTTATCATGGACAAGGAGCTTGAGGAAACAGTCAACAAGAAAATGGTAGTTGCTTCAGATGAGAGATTTCAT AAAGATGAATCTCAGAAATTTGCATCTTCATTGTTCAAAGATTCCTCTAAAGCAGAGTCATCCTGGATTGCCCGTACGGTGGAGGCTCAGCAGAAAGGTA AAGGTGTCTCTGTCTCATGGGACCATACAAAAGAGGAACCTAGAGAAGAGTTCAAGGTAAAATCTCAATGGGGTAGGACTCAGGACGATACGTACCACAA ACAGGCGTTTCCAGCGTTCGGGCAATTTCAGCAAAATTCTGGACCCAAAAGCAGTATCGAAGCTGGCACAGATTCATCTTCTGCTGGGCGCCACTCATTA GGCAGCATAAAATTTGGTGACAAGAGACGGACCAAGACAGAGAAGACAATCAGCTTGGAAGTTCTTCGACAGCACTTTGCAGGAAGCCTTAAAGATGCTG CGAAGAGTATAGGCGTGTGCCCCACCACTCTGAAAAGAATATGCAGGCAACATGGCATCACCCGTTGGCCCTCTCGAAAGATTAAGAAGGTTGGCCATTC ATTGAAGAAACTTCAACTAGTGATTGACTCAGTACAAGGTGCTGAGGGTGCCATTCAAATGGGTTCCTTCTACGCAACTTTCCCAGAATTGACCTCTCCA AATCTTTCTGGTAATGGTGGTCTTCCATCAACCAAGACAGATGAAAATTTCAAGCAGTTAAACCCTCAACCTGAGAGTGGCATATTTAGTGCTGCGCCTA GTGCTTTAAAATCCCCATCCTCATCATGTAGTCACAGTTCTGGATCGAGTATCTGCTGTTCCATTGGGGTAAAGCAGGACACAACCACCAATAATGGCTC AGTTAGCGGGGATCCATTAATGGTAGAGGACCATGGTGATGTGCTCAAGAGAACACACAGTGATGCGGAACTGCATGCCTTGAATCGTGACGAAACAAAG CTTCTCGTAAGATCTCAAAGCCACAAAACATTTGGTGACCTTCCAAGTCCAAAGACTCTGCCGCCCCTCCCAAAAAGCAGTAGTCGCGTTATACGTGATG GGGGTGGCTTTAGAGTGAAGGCCACTTTTGGAGCAGACAAAATCCGGTTCACCTTGCAACCAAACTGGGGTTTCAGGGACTTGCAACAAGAGACTGCAAG GCGTTTCAATTTAGACGATATTTCTGGAATTGATCTCAAGTATTTGGACGACGATCTAGAGTGGGTTCTTTTGACATGTGATGCTGACCTTGAGGAGTGT AGAGATGTCTATAAATTGTCTGAGATCCATACAATCAAAATATCCCTACATCAACCTGCTCAACCACATCTGGGAAGTTCATTGGAATCTAGAGGGCCAC ATCTGGGAAGTTCATTGGGAACTGGAGTGCCATTCTAA
AA sequence Show only first row Show all	>Potri.004G205500.8 pacid=42793849 polypeptide=Potri.004G205500.8.p locus=Potri.004G205500 ID=Potri.004G205500.8.v4.1 annot-version=v4.1 MDDGNGPNFIPDSAFENFSGSSMDLDFMDDLLYEGCWLETADEFNFLQAGTISSSDLNDPRQYFPLFEPNSSNSNVNSHQENYQGVDELGGIGSQNQNIR SLDQSGSFPVESNELGRRLWIAPTATGPSSPVRDRLMHAIGQVKECTKDRDVLIQIWVPVKKEGKNVLTTIGQPYLLDRKCQSLASYRNVSKDFQFPADE DSKELVGLPGRVFLRELPEWTPDVRFFSGVEYLRKNHAKQFNIRGSLAVPVFEQGSRTCLGVIEVVTTTRDISYRPDLENVCKALEAVDLRSPQDFCPPS LKVCKEVCQAAAPEISKILESVCKAHRLPLALAWAPCFREGKGGCRHFDESYSYFISLVNSAYFVAERDDWGFYMACSEQYLSFGHGIVGRAFATNKQCL STDVAAFSKTDYPLSHHAKMFGLHAAIAIPLQSSYAGSADFVLELFLPKDCRNTEEQKQMWDILPITVQQACQSWHVIMDKELEETVNKKMVVASDERFH KDESQKFASSLFKDSSKAESSWIARTVEAQQKGKGVSVSWDHTKEEPREEFKVKSQWGRTQDDTYHKQAFPAFGQFQQNSGPKSSIEAGTDSSSAGRHSL GSIKFGDKRRTKTEKTISLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQMGSFYATFPELTSP NLSGNGGLPSTKTDENFKQLNPQPESGIFSAAPSALKSPSSSCSHSSGSSICCSIGVKQDTTTNNGSVSGDPLMVEDHGDVLKRTHSDAELHALNRDETK LLVRSQSHKTFGDLPSPKTLPPLPKSSSRVIRDGGGFRVKATFGADKIRFTLQPNWGFRDLQQETARRFNLDDISGIDLKYLDDDLEWVLLTCDADLEEC RDVYKLSEIHTIKISLHQPAQPHLGSSLESRGPHLGSSLGTGVPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.004G205500 [exp]	0	1	Pt-NIN.1
AT2G19330		PIRL6	plant intracellular ras group-...		Potri.018G139700 [exp]	2.44	0.9379
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.013G090800 [exp]	8.94	0.8742	Pt-AKIN10.3
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176500 [exp]	12.16	0.9248
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125501 [exp]	12.96	0.9105
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Potri.006G121000 [exp]	13.11	0.8880
AT4G24020		NLP7	NIN like protein 7 (.1)		Potri.001G087900 [exp]	13.19	0.8808
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	16.06	0.9285
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Potri.001G020200 [exp]	17.08	0.8588
					Potri.001G130800 [exp]	18.65	0.9273
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G045200 [exp]	20.59	0.8832

Compare expression of checked genes

Potri.004G205500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.