Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17140 1150 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 284 / 2e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 280 / 6e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 278 / 3e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 273 / 6e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 271 / 7e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 277 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 262 / 6e-77 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12620 256 / 1e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G16880 259 / 2e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149800 [exp] 296 / 3e-89 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 294 / 6e-88 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 283 / 7e-84 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 280 / 3e-82 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 281 / 3e-81 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 273 / 1e-80 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242500 [exp] 271 / 2e-80 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 271 / 3e-80 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 271 / 4e-80 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013832 [exp] 1204 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026545 [exp] 1171 / 0 AT2G17140 1002 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 277 / 1e-80 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 272 / 1e-78 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 265 / 3e-76 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027914 [exp] 258 / 4e-74 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 256 / 2e-73 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 256 / 2e-73 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034616 [exp] 255 / 4e-73 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 258 / 5e-73 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G205600.1 pacid=42793949 polypeptide=Potri.004G205600.1.p locus=Potri.004G205600 ID=Potri.004G205600.1.v4.1 annot-version=v4.1 ATGGACCTTAAAACAATCAAACTCACAAGAGTTCTCCTCAAAAACACCAACGATCCTAAGATTTCATGGTATCTTTTCAAGCGTATTCTCTCCTTACCAG TCACCCAACAATGTCCTCAATCCATTCCCATCATTACCCGCATCCTCATTCGCGCCAAAATGCTTAACGAACTCGATGATTTACCCCAACTTCTCATTGC CTCACAGCCTCAAGAAACCTTGCATACTTCTCTTGTATCATTCATAACAGTTTTAGCGAAATCGGGTCTTTTTGGTAAGGCCATTTCGCAATTTAAATCG TTGCGTTTTCGATTCCCTGAAAACCCACCTTCTATCTATTTGTATAATGTTCTCCTTAGATCATGTACTAAAGAGGGCCGTGTAGATTGTGTTTCTTGGT TGTGTAAAGATATGGTGGCTTCTGGGGTGTCTCCAGAGACTTATACTTTCAATGTTTTGATTGGTTTGCTTTGTGATTCGGGTTGTTTGGATGATGCTCG AGAGTTGTTTGATAAAATGCCTGAGAAAGGTTGTGAACCGAACGAGTACAGTTTTGGAATTTTGGTTCGTGGGTATTGTAGAGCTGGATTTACTAGTAAA GGCTTGGAGCTTTTGGGTGAAATGAGGAGATTAGGGTTTTCCCCCAATAAGGTTGTTTATAATACTCTGATTTCGAGTTTTTGTAAGGAAGGTAAAACTG ATGATGCTGAAAAATTGGTGGATGAGATGAGGAAGGATGGGTTGTCTCCAGATGTGGTGACTTTCAATGCTAGGATATCGGCTTTGTGTAGTTCTGGGAA GGTTCTTGAAGCTTCAAGAATTTTTAGGGATATGCAAATTGATGAAGTGCTAGGGCTTCCTCAGCCTAATATTATTACGTATAATTTAATGCTTGGGGGG TTTTGCAAGGAAGGAATGTTGGAAGAAGCTAGGGCCCTGTTTGAGAAAATGAAAGTAAGTGAAAATTTAATGAATAGAGAGAGTTACAATATTTGGTTGC TGGGTTTGGTCAGGATTGGAAAGCTCTTGGAGGCTCAGTTAGTTCTTAAAGAAATGGTGGATATGGGCATGGAGCCTAATGTATACTCATATAATATTGT GATGGATGGGCTCTGCAAGAATGGGGTGCTCTTTGATGCAAGAATGCTGATGCGTTTAATGACAAGCAGCGGTGTTTTGCCTGATACGGTAACTTACACC ACTTTACTTCATGGGTACTGTCATACAGGGAAGGTATCTGAAGCTAACAATGTTTTGCGTGAGATGATGAGGGATGGCTGCTCCCCGAATAATTATACTT GCAACATTTTGTTGTACAGTCTGTGGAAGGAGGGGAGAATATCAGAAGCGGAAGAGTTGCTGCAAAAGATGAATGAGAAAGGTTACGTCATCGATACAGT GACATGCAATATTGTGATTGATGGTCTATGTAACAATGGAAAGTTAGACAAAGCAATTGAAATAGTAAATGGGATGTGGACTCATGGAAGTGCTGCTCTT GGTAACTTGGGGAACTCATATATCGGCCTTGTTGATGATAGTGATAGCAGGAAAAAATGCATGCCTGATTTAATCTCATATTCAACCATAATTAGTGGTT TATGCAAGGCTGGGAGGGTTGGTGAAGCTAAAAAGAAGTTCATTGAGATGATGGGGAAAAACCTGCAGCCTGATTCAGCTATTTACGATGTGTTCATACA TAGCTTCTGCAAAGAGGGTAAGATATCATCTGCATTTCGAGTACTCAAAGACATGGAGAAAAAAGGATGCAACAAGACCCTGCAAACTTATAATTCATTG ATCATGGGCTTAGGGAGTAAAAACCAAATATTTGAAATTTATGGATTGATAGATGAGATGAGAGAAAGAGGGGTTTCTCCTGATGTCTCAATATACAATA ATGTGCTTAGCTCTCTATGTGAAGGGGGAAGGGTTAAAGATGCCCCTTCTGTTTTGGATGAGATGCTGCAAAAGGGCATTTCTCCGAATATTTCATCCTT CAGTATACTAATTAAAGCTTTTTGCAAGGCTTGTGATTTTAGTGCAGTGGATGAGATATTCGAGATTGCTCTGAATGTTTGTGGCCACAAGGAGGCCCTT TACAGTTTAACATTCAATGAGTTACTTGTTGGAGGTGAAGTTGTCAAAGCTAAAGAGCTGTTTGAAACTGCCTTAGATAGATCTTTTGATGTGGGGAATT TTCTCTACAAGGATCTCATTGACCATCTCTGTAAAGATGAGAAGTTGGATGATGCTAGTGGCATTCTACACAAGTTGATTGATAAAGGATACTGGTTCGA TCCTGCATCATTCATGCCTGTGATTGATGGTCTTGGTAAAAGAGGAAACAAGCATGAGGCTGATGAACTTGCAGAGAAAATGATGGAAATGGCTTCAGAA GGTAAGGTAAAAAATAAGGTCCATCAAAATGCGAGTTGTTCCATCCAAGGGAAGAAGAATAAGGATGGTGAAAGTGAATGGCAGACCATATTGCACAGAG ATGATGGCAGTGGAATTGCACTGAAAGCTCTTAAGCGTGTACAGAGAGGCTTGGATCAGGGAAGCATATCAAGTTTGGAGCCCCAGAAAGATGACTTCCT TGATTACTGGGAAGGTAGTCGTTAA
AA sequence Show only first row Show all	>Potri.004G205600.1 pacid=42793949 polypeptide=Potri.004G205600.1.p locus=Potri.004G205600 ID=Potri.004G205600.1.v4.1 annot-version=v4.1 MDLKTIKLTRVLLKNTNDPKISWYLFKRILSLPVTQQCPQSIPIITRILIRAKMLNELDDLPQLLIASQPQETLHTSLVSFITVLAKSGLFGKAISQFKS LRFRFPENPPSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSK GLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGG FCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYT TLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAAL GNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSL IMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEAL YSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMASE GKVKNKVHQNASCSIQGKKNKDGESEWQTILHRDDGSGIALKALKRVQRGLDQGSISSLEPQKDDFLDYWEGSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17140			Pentatricopeptide repeat (PPR)...		Potri.004G205600 [exp]	0	1
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.015G047600 [exp]	1.41	0.8322
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	2.44	0.8257
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	3.00	0.8630
AT3G14580			Pentatricopeptide repeat (PPR)...		Potri.001G379500 [exp]	4.47	0.8162
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082366 [exp]	14.69	0.7807
AT5G66631			Tetratricopeptide repeat (TPR)...		Potri.005G128600 [exp]	17.29	0.7875
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.013G061500 [exp]	23.36	0.7500
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	29.46	0.8218
AT1G33350			Pentatricopeptide repeat (PPR)...		Potri.013G089400 [exp]	34.33	0.8080
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	34.69	0.7671

Compare expression of checked genes

Potri.004G205600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.