Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17210 737 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 414 / 1e-132 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 410 / 3e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 409 / 1e-130 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 402 / 3e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 398 / 3e-127 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G63370 394 / 6e-125 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G01580 387 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 392 / 5e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 395 / 1e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 436 / 4e-140 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 427 / 1e-137 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 424 / 4e-136 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 416 / 8e-134 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 413 / 4e-133 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 409 / 8e-131 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 407 / 8e-131 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G080200 [exp] 404 / 3e-129 AT1G11290 447 / 3e-145 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 404 / 4e-129 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001220 [exp] 433 / 1e-139 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 429 / 3e-138 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 429 / 5e-138 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 427 / 1e-137 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 429 / 4e-134 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 416 / 3e-132 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 414 / 2e-130 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 405 / 9e-130 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 409 / 1e-129 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 400 / 3e-127 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G205900.1 pacid=42793885 polypeptide=Potri.004G205900.1.p locus=Potri.004G205900 ID=Potri.004G205900.1.v4.1 annot-version=v4.1 ATGCGTTTTTCAGCAATAGTCTCAGGTTCGAAACTCCCTAATTGGATTCTGAGAATCAAAGAATCATCAGCTAATGGAAAATGGCAAGAAGTCGTTTCCC ACTACCATGAAATAAAAAAAGCAGGAATTCAAACTGTAGATGTTTCAGTGTTTCCTCCCATTCTCAAAGCATGGTCATTCCTGTCTCACAGGCATGGAAA GTCCCTTCATGCTTGTTTGATCAAGCAAGGATTTGACTCGTTCACTTCCATTGGGAATTCCATCATGGGTTTTTACATTAGATGTGGGGACTTTGACATT GCTGTGGATGTTTTTAATTCCATGAGAAGAAGCAGAGATTCAGTTTCTTGGAATATTTTGATTCACGGGCACCTTGATAACGGTGCCTTAGTGGCAGGAT TGTGGTGGTTTACTAATGCTAGGGTTGCTGGGTTTGAACCCAATATTTCCACGATGGTGCTTGTAATCCAGGCGTGTCGCATTCTTGGAACTAAGCATGA TGGGCTCATACTACATGGTTATTTAATCAAAAGTGGCTTTTGGGCTATTTCTTCAGTTCAAAATTCTTTATTGAGCATGTACGTGGATGCTGACATGGAG TGTGCAAGAGAGCTGTTTGATGAAATGCATGAGAAAGATGTTATCGCTTGGAGTGTGATGATTGGTGGCTATTTGCAGTGGGAGGAACCTCAGGTTGGGT TGCAGATGTTTAGGAAGATGGTGTTGGTACCTGGGATTGAACCAGATGGAGTAGTTATGGTCAGTGTTCTTAAAGCTTGTGCTAGTTCAAGAGACGTTTG TACTGGGAGATTGGTGCATGGGCTGGTGATTCATAGAGGTTTTGATTGTGATTTGTTTGTTGAGAACTCTCTGATTGATATGTATTCAAAATGTAAGGAT GCTGGTTCTGCATTTAAGGTTTTCAATGAGATATCTCAAAGGAACAACGTCTCGTGGAATTCTATGCTATCCGGATTTGTCCTCAATGAAAACTATTCAG AAGCTCAGTCGTTGATTTCTTCAATGAGGAAGGAAAGAGTTGAGACAGATGAAGTAACTCTAGTGAATATTCTTCAAATCTGCAAGTATTTTGTGCACCC ATTTCACTGCAAGTCGATCCATTGTGTGATGATCCGTAGGGGCAGTGAAGCAAATGAATTGGTGCTAAGTGCACTGATTGATGCTTATGCGAAGTGCTAT CTTATTGAAATAGCATGGGAAGTCTTTGCGAGGATGAGGAGAAGAGACGTTGTTTCATGGAGCACAATGATTTCTGGGTTTGCTCATTGTGGCAAGCCTG ATGAAGCTATAGCTGTCTACCAAGAGATGGACAGAGACCTTGTAAAGCCTAATGTCATTACCATCATAAATCTTCTTGAGGCATGTTCTGTTACAGCTGA ACTAAAGAGATCAAAGTGGGCACATGGAGTTGCAATTAGACAAGGCTTTGCATCAGAGGTGACAGTTGGAACTGCAGTTGTTGACATGTACTCAAAATGT GGAGAAATTTTGGCCTCAAGAAGGGCCTTCGATCAACTCGCTTTGAAAAATATAGTAACTTGGAGTGCCATGATTGCTGCATATGGTATGAATGGTCTTG CTCATGAAGCTTTGGCTTTGTTTGCTGAAATGAAAAGGCATGGTTTAAAGCCAAACCCTGTGACCACTCTCTCAGTGCTGGCTGCCTGTAGTCATGGTGG ATTGGTCGAGGAAGGGCTCTCCCTTTTCAAATCAATGGTTCAAGAACTCGGGTTGGAGCCTGGGTTTGAACACTACTCATGCATGGTTGACATGCTAGGT CGAGCAGGAAAGCTTGACACTGCAATAGAAGTGATCAAGGCGATGCCTCATAATCTAAAGAATGGTGCAAGCATTTGGGGATCACTTTTAAGTGCCTGTA GAAGCTACGGCCTGACCGAGCTCGGCAAAGAAGCCATCTCCCGTGTTCTTGAGTTGGAGCCTTCGAACTCAGCAGGCTATTTAGTAGCATCAAGCATGTA TGCAGCTGATGGTCTGTGGGATGATGCAGCAAGGATAAGAGTATTAGCAAAGGAGAAGGGAGTGAAGGTTGTTGCTGGATACAGCTTAGTACACATTGAT AACAAGGCATGTAGGTTTGTTGCTGGAGACGGGTCTCATCCACGATCAGATGAGATATTCTCCATGGCTCAACAGCTACATGATTGTATCAAGATTGACG AAAAAAAAGAAGGAAATACATGGCTAGCAGTCATTGAATGCTTAACCTAG
AA sequence Show only first row Show all	>Potri.004G205900.1 pacid=42793885 polypeptide=Potri.004G205900.1.p locus=Potri.004G205900 ID=Potri.004G205900.1.v4.1 annot-version=v4.1 MRFSAIVSGSKLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDI AVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADME CARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKD AGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCY LIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKC GEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLG RAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHID NKACRFVAGDGSHPRSDEIFSMAQQLHDCIKIDEKKEGNTWLAVIECLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17210			Tetratricopeptide repeat (TPR)...		Potri.004G205900 [exp]	0	1
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.013G042300 [exp]	7.48	0.7382
AT4G32910			unknown protein		Potri.018G044300 [exp]	11.13	0.7374
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	14.17	0.7594
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Potri.018G097600 [exp]	16.00	0.6846
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.018G036500 [exp]	17.32	0.7339
AT3G58610			ketol-acid reductoisomerase (....		Potri.004G043700 [exp]	20.14	0.7222	Pt-PGAAIR.3
AT4G33100			unknown protein		Potri.006G224400 [exp]	21.49	0.7008
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.007G131500 [exp]	22.84	0.6696
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	27.82	0.7376
AT3G02330			Pentatricopeptide repeat (PPR)...		Potri.004G111300 [exp]	39.77	0.7136

Compare expression of checked genes

Potri.004G205900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.