Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38270 881 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G61130 714 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 568 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT2G46480 519 / 8e-179 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT2G20810 445 / 9e-150 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 440 / 8e-148 GAUT11 galacturonosyltransferase 11 (.1) AT3G25140 437 / 3e-146 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 414 / 4e-137 GAUT9 galacturonosyltransferase 9 (.1) AT2G30575 401 / 1e-131 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 386 / 5e-126 GAUT6 galacturonosyltransferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G073800 [exp] 728 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 721 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.016G001700 [exp] 558 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 536 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.019G108900 [exp] 448 / 5e-151 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 447 / 2e-150 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.015G060800 [exp] 446 / 7e-150 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.017G106800 [exp] 441 / 7e-148 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.005G218900 [exp] 439 / 1e-146 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026546 [exp] 938 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 907 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009311 [exp] 713 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 692 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 691 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 584 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10018554 [exp] 450 / 2e-151 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10007979 [exp] 444 / 2e-149 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10013506 [exp] 441 / 4e-148 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10011834 [exp] 432 / 2e-144 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.004G206000.1 pacid=42794753 polypeptide=Potri.004G206000.1.p locus=Potri.004G206000 ID=Potri.004G206000.1.v4.1 annot-version=v4.1 ATGGAAGAACAGAGAAGGAGGAGAAGAAGAAGATTCTGGACTTCAAGCTCTCTAGCTCTTCTTCTGATCTTCTTCATGGTTGTTCGTGCAGATTTATCAG ATTATAATCCAACTCTTCAAAGAGAGCCCAAAGCGCATCATCGGCGATTACATCAGGAACATGATGCTTCTTCTGTGGCTGGGCACGGGGTTCAATCAGA TGAAATGGATATCAACATAATTGCAACATACAGTGACACTTCTGGTGCTGTTCGAACGAGTAGGGTGAAAATGAGTGACCTGTCTCCTTCTTGGGTCTTG GAAAACCCTGCAGATAAAAATCATGATCAGCCAAAGACTTCCCAGTTTCAGAGATTAGAAGATTCATCAAAAGCTGGAGCAACACATGAAGATGATGTGC TGCATTCTGCGAGGGATCATCAATATGGTGAAGGTGGAATCCCATCTTCTTGGAAGTTACCAATGAGCCCAGTGAAGCTCCAGCGCCAGACAGCACGGAA GGACAGGAGGGTACTCCGAACTTCAGTGCTAATTCAACAAGATAAAGGAGCTGCTGACAGCCAGACAGAAGCAACTGCATTTATATGGTCCAAAAGCCTG GACACTTCTATCAAGGGAAAGTACAGTATATGGAGGAGAGATTTTGATAGTCCAAATTCTGATTCTACTCTGAAACTCATGCGGGACCAGATTATAATGG CCAAAGCTTATGCAAATATTGCCAAATCAAACAATGTAACTACACTTTACAACTCTCTTATGAAACAGTCGAGAGAAAGCCAGCTTGCTATTGGAGAAGC AATGTCTGATGCAGAGCTTCACCCAAGCGCACTTGTTCAAGCAAAAGCAATGGGGCATGTTTTGTCTATAGCAAAGGATCAACTATACGAATGTCCTACA ATGTCTCGGAAGTTAAGGGCCATGCTCCAGTTAAATGAAGAGAATGTAAATGCTTTGAAGAAAAAAAGTGCGTTCTTGATTCAACTAGCAGCAAAAACAA TCCCAAAACCATTACACTGTCTTCCTCTGCAGCTTGCAGCTGACTATTTCCTATATGGTTATCAAAACAAGAAGTATTTGGACAAAGAAAAGGTTCAAGA TCCGTCTTTGTTCCACTATGCTATCTTCTCTGATAATGTGCTCGCAACATCTGTGGTTATCAATTCCACTGTGCAGCATGCAAAAGATCCACAGAAACAT GTTTTCCATATAGTCACAGATAAACTGAACTTTGCTGCGATGAAAATGTGGTTTATTGTCAATCCTCCAGCCAAAGCAACAGTTCAAGTTGAAAATATTG ATGATTTTAAGTGGTTGAATGCCTCTTACTGTTCTGTTTTACGTCAACTTGAATCTGCCCGGATTAAAGAATACTATTTCAAGGCTAATCACCCTTCCTC TCTTGCTTCTGGTGCTGACAATCTCAAATATAGGAATCCAAAATATTTATCTATGCTGAATCATCTTCGATTCTATCTTCCTGAAGTATATCCAAAACTA GATAAGATCCTTTTCTTGGATGATGACATTGTAGTTCAGAAGGATTTGACACCACTTTGGTCCATTGATCTACAAGGGATGGTAAATGGTGCAGTGGAGA CATGTAAGGAGAGCTTTCATAGGTTTGACAAGTATCTAAACTTCTCGAATCCAAAGATCTACAACAATTTTGATCCAAATGCTTGCGGTTGGGCATTTGG CATGAACATGTTTGACTTGAAGCAGTGGAAAAGGTCGAATATCACTGGGATATATCATCACTGGCAAGATCTGAATGAGGATAGAACTCTTTGGAAATTG GGCTCGTTGCCACCGGGACTGATAACCTTCTATAACCTAACCTATCCACTGGACCGAAGTTGGCATGTCTTGGGACTTGGTTATGACCCGGCTCTTAACC AAACTGAGATAGAGAATGCAGCTGTAGTTCACTACAATGGGAATTACAAGCCATGGTTGGATTTGGCTGTTGCCAAGTACAAGCCTTACTGGTCTAGATA TGTACAGTATGATAACCCTTATCTTCAACAATGCAACATTGTTGAAGAATGA
AA sequence Show only first row Show all	>Potri.004G206000.1 pacid=42794753 polypeptide=Potri.004G206000.1.p locus=Potri.004G206000 ID=Potri.004G206000.1.v4.1 annot-version=v4.1 MEEQRRRRRRRFWTSSSLALLLIFFMVVRADLSDYNPTLQREPKAHHRRLHQEHDASSVAGHGVQSDEMDINIIATYSDTSGAVRTSRVKMSDLSPSWVL ENPADKNHDQPKTSQFQRLEDSSKAGATHEDDVLHSARDHQYGEGGIPSSWKLPMSPVKLQRQTARKDRRVLRTSVLIQQDKGAADSQTEATAFIWSKSL DTSIKGKYSIWRRDFDSPNSDSTLKLMRDQIIMAKAYANIAKSNNVTTLYNSLMKQSRESQLAIGEAMSDAELHPSALVQAKAMGHVLSIAKDQLYECPT MSRKLRAMLQLNEENVNALKKKSAFLIQLAAKTIPKPLHCLPLQLAADYFLYGYQNKKYLDKEKVQDPSLFHYAIFSDNVLATSVVINSTVQHAKDPQKH VFHIVTDKLNFAAMKMWFIVNPPAKATVQVENIDDFKWLNASYCSVLRQLESARIKEYYFKANHPSSLASGADNLKYRNPKYLSMLNHLRFYLPEVYPKL DKILFLDDDIVVQKDLTPLWSIDLQGMVNGAVETCKESFHRFDKYLNFSNPKIYNNFDPNACGWAFGMNMFDLKQWKRSNITGIYHHWQDLNEDRTLWKL GSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAVAKYKPYWSRYVQYDNPYLQQCNIVEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Potri.004G206000 [exp]	0	1
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.006G096100 [exp]	1.73	0.8891	DEX1.1
AT5G07720			Galactosyl transferase GMA12/M...		Potri.012G068300 [exp]	4.47	0.8835
AT1G77260			S-adenosyl-L-methionine-depend...		Potri.002G077100 [exp]	8.83	0.8679
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G002600 [exp]	12.48	0.8592
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	12.48	0.8297
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.018G065900 [exp]	13.22	0.8350
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	16.09	0.7996
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.007G118300 [exp]	18.13	0.7939
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Potri.003G098700 [exp]	18.76	0.7957
AT3G62360			Carbohydrate-binding-like fold...		Potri.002G194000 [exp]	22.80	0.8341

Compare expression of checked genes

Potri.004G206000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.