Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38260 306 / 5e-105 Protein of unknown function (DUF833) (.1) AT1G20740 109 / 3e-28 Protein of unknown function (DUF833) (.1) AT1G20730 96 / 1e-23 Protein of unknown function (DUF833) (.1) AT1G20680 96 / 2e-23 Protein of unknown function (DUF833) (.1), Protein of unknown function (DUF833) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252250 [exp] 345 / 2e-120 AT4G38260 285 / 9e-97 Protein of unknown function (DUF833) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013833 [exp] 315 / 1e-108 AT4G38260 305 / 3e-104 Protein of unknown function (DUF833) (.1) Lus10026547 [exp] 314 / 5e-108 AT4G38260 305 / 2e-104 Protein of unknown function (DUF833) (.1) Lus10016023 [exp] 298 / 1e-101 AT4G38260 267 / 1e-89 Protein of unknown function (DUF833) (.1) Lus10012251 [exp] 264 / 1e-88 AT4G38260 242 / 4e-80 Protein of unknown function (DUF833) (.1) Lus10016024 [exp] 258 / 2e-86 AT4G38260 239 / 4e-79 Protein of unknown function (DUF833) (.1) Lus10012253 [exp] 218 / 1e-70 AT4G38260 208 / 1e-66 Protein of unknown function (DUF833) (.1) Lus10012254 [exp] 125 / 1e-34 AT4G38260 97 / 4e-24 Protein of unknown function (DUF833) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05742 [poplar] [flax] TANGO2 Transport and Golgi organisation 2
Representative CDS sequence Show only first row Show all	>Potri.004G206300.1 pacid=42795311 polypeptide=Potri.004G206300.1.p locus=Potri.004G206300 ID=Potri.004G206300.1.v4.1 annot-version=v4.1 ATGTGTATAGCGGTGTTTTTATGGCAAGCTCACCCTCTTTATCCATTTCTCTTGTTACTCAACAGAGATGAATATCACAGCCGGCCAACAAAGCCTCTGG GATGGTGGGAAGGTGGAGAGATTCTAGGTGGGAAAGATGAGCTTGCAGGTGGGACATGGCTGGGTTGCACCAGAGATGGTAAGATTGCTTTTATCACTAA TGTTAGAGAAGTTAAATCAATCCCGCAAGCTAAGACTCGAGGTGACCTTACCCTTCGTTTTTTAGAGAGCAACAAGAACCCAAAGGAATATGCAGAGGAG CTTTCCAAGGAGGCAGATCAGTATAATGGGTTTAACCTGATATTAGCTGATATATCTTCTAAATCCATGGTTTACTTAACAAATAGGCCAAAACCAGAAA ATTTCATAGTCATGGAGGTGACACCAGGGATGCATGTACTGTCAAATGCAAGCCTAGACTCTCCATGGCCTAAGGCACAACGTCTTGGCCATGGTTTTAA AGACCTACTGGAAAAATATGATGAAGCGGAACTTCCCACAAAAGAGATGGCTGAAATACTAATGACCAACACAATTAAAGATGATGAAAGCATGCTTCCT GGAATTTATCCTTCTGAGCGGGAACACCAGTTAAGTTCTATATTCATCGAGGCAGACACTCCCCTGGGACGATATGGAACTAGAAGTACTTGTGCATTGT CCGTAAAATCAAGTGGAGAGGTTAACTTTTACGAAAGGTATCTTGACAAGGACCAGTGGAAAGAGCACACAATGAGTTACCAGATCAAAAAGATGGAAGT ACATGGGTGA
AA sequence Show only first row Show all	>Potri.004G206300.1 pacid=42795311 polypeptide=Potri.004G206300.1.p locus=Potri.004G206300 ID=Potri.004G206300.1.v4.1 annot-version=v4.1 MCIAVFLWQAHPLYPFLLLLNRDEYHSRPTKPLGWWEGGEILGGKDELAGGTWLGCTRDGKIAFITNVREVKSIPQAKTRGDLTLRFLESNKNPKEYAEE LSKEADQYNGFNLILADISSKSMVYLTNRPKPENFIVMEVTPGMHVLSNASLDSPWPKAQRLGHGFKDLLEKYDEAELPTKEMAEILMTNTIKDDESMLP GIYPSEREHQLSSIFIEADTPLGRYGTRSTCALSVKSSGEVNFYERYLDKDQWKEHTMSYQIKKMEVHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38260			Protein of unknown function (D...		Potri.004G206300 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.015G018600 [exp]	2.00	0.8817
AT5G13970			unknown protein		Potri.014G143800 [exp]	2.64	0.8679
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.006G098200 [exp]	3.87	0.8773	Pt-HPT3.2
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.001G029800 [exp]	4.79	0.8361
AT5G22540			Plant protein of unknown funct...		Potri.004G187100 [exp]	6.48	0.8684
AT5G43960			Nuclear transport factor 2 (NT...		Potri.014G192900 [exp]	6.92	0.8772
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.002G099700 [exp]	8.24	0.8506
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.014G073400 [exp]	9.00	0.8626
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.010G032301 [exp]	9.94	0.8592
AT5G46020			unknown protein		Potri.004G051100 [exp]	10.58	0.8509

Compare expression of checked genes

Potri.004G206300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.