Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17230 481 / 3e-171 EXL5 EXORDIUM like 5 (.1) AT5G51550 353 / 2e-121 EXL3 EXORDIUM like 3 (.1) AT2G35150 339 / 7e-116 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT1G35140 135 / 7e-37 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT4G08950 135 / 1e-36 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT5G64260 128 / 2e-34 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT5G09440 106 / 2e-26 EXL4 EXORDIUM like 4 (.1) AT3G02970 67 / 2e-12 EXL6 EXORDIUM like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167800 [exp] 599 / 0 AT2G17230 499 / 1e-178 EXORDIUM like 5 (.1) Potri.015G129700 [exp] 365 / 5e-126 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.012G128100 [exp] 361 / 3e-124 AT5G51550 521 / 0.0 EXORDIUM like 3 (.1) Potri.015G122100 [exp] 329 / 8e-112 AT2G35150 377 / 3e-131 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Potri.014G126000 [exp] 146 / 6e-41 AT5G64260 240 / 9e-78 EXORDIUM like 2 (.1) Potri.002G098600 [exp] 145 / 2e-40 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163000 [exp] 133 / 3e-36 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.005G163500 [exp] 132 / 1e-35 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163700 [exp] 131 / 2e-35 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013834 [exp] 503 / 5e-180 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10026548 [exp] 501 / 2e-179 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1) Lus10031130 [exp] 349 / 1e-119 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10018314 [exp] 344 / 2e-117 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10031709 [exp] 241 / 1e-78 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10017138 [exp] 222 / 9e-72 AT2G35150 240 / 9e-80 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10017050 [exp] 122 / 6e-32 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017139 [exp] 116 / 2e-31 AT2G35150 149 / 1e-44 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10021370 [exp] 119 / 9e-31 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10013789 [exp] 105 / 6e-26 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [poplar] [flax] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Potri.004G206600.1 pacid=42793896 polypeptide=Potri.004G206600.1.p locus=Potri.004G206600 ID=Potri.004G206600.1.v4.1 annot-version=v4.1 ATGTCACAACGTCCTTATTCCCCCCTTTCATTTTGTTGTGCCCTTTTCATACCATTACTATTTATTCACCATGTCTATGCTTCAACTTCTTCAACTAGTT CCCCACAAGTTCAAACCCTGAACACAAAACCAGATATTATAAACCCAAAACTACCACCAAGAACCCTCTCATCCTCTAAGAAATTTGAGGGCTCATCAGA TTTAGTCCAACTTCGTTACCATATGGGTCCAGTCCTCTCTTCAGCCCCAATAAACATCTACCTTATCTGGTATGGCCGTTGGGCTAATTCTCAAAAACTT CTCATCAAAGACTTCATTAACTCCATCTCCCCCTCAACTGTTGCCGCCAAGCCCTCCGTCTCTGACTGGTGGCGCACTGTGTCTTTGTACACAGATCAAA CTGGGGCTAACGTCTCACGTTCAATACTCATAGCCGGCGAATATGCTGATAGTGCTTATTCACATGGGACTGGCTTAACAAGACTTACAATCCAACAAGT GATAGCTTCAGCTGTAAGGTCTGCACCTTTCCCAGTAGATCACAAGAATGGGATCTACCTCATATTGACCTCACAAGATGTGACCATGCAAGACTTCTGT AGAGCAGTGTGTGGGTTCCATTACTTTACATTTCCATCAATGGTTGGCTACACATTGCCTTATGCTTGGGTTGGTAATTCAGGCAAACAATGCCCTGAAG TATGTGCTTACCCTTTTGCAGTCCCTGGTTATATGGGTGGAGGTGGACCAGGAGCCTTGAAGCCACCAAATGGGGATGTGGGTGTTGATGGAATGATTAG TGTTATAGGCCATGAACTTGCAGAGTTGTCTTCAAATCCCTTGGTGAATGCTTGGTATGCTGGGGAGGATCCAACAGCACCAACTGAGATAGGGGATTTG TGTGAAGGGTTGTATGGGACAGGTGGCGGTGGTGGGTATATAGGGCAGGTGATGAGGGATAGGAAAGGCAGGACCTTTAATTTGAATGGTAGAAGAGGGA GGAAGTTCTTGGTGCAATGGATCTGGAGCCCCGAGTTGAAGGCATGTGCCGGTCCTAATGCTTTGGACTGA
AA sequence Show only first row Show all	>Potri.004G206600.1 pacid=42793896 polypeptide=Potri.004G206600.1.p locus=Potri.004G206600 ID=Potri.004G206600.1.v4.1 annot-version=v4.1 MSQRPYSPLSFCCALFIPLLFIHHVYASTSSTSSPQVQTLNTKPDIINPKLPPRTLSSSKKFEGSSDLVQLRYHMGPVLSSAPINIYLIWYGRWANSQKL LIKDFINSISPSTVAAKPSVSDWWRTVSLYTDQTGANVSRSILIAGEYADSAYSHGTGLTRLTIQQVIASAVRSAPFPVDHKNGIYLILTSQDVTMQDFC RAVCGFHYFTFPSMVGYTLPYAWVGNSGKQCPEVCAYPFAVPGYMGGGGPGALKPPNGDVGVDGMISVIGHELAELSSNPLVNAWYAGEDPTAPTEIGDL CEGLYGTGGGGGYIGQVMRDRKGRTFNLNGRRGRKFLVQWIWSPELKACAGPNALD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.004G206600 [exp]	0	1
AT4G02100			Heat shock protein DnaJ with t...		Potri.014G122300 [exp]	1.41	0.8264
					Potri.011G077440 [exp]	8.83	0.7643
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.001G326200 [exp]	10.19	0.8034
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	11.87	0.8173
AT1G57680			unknown protein		Potri.003G003500 [exp]	12.48	0.7198
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.005G098600 [exp]	14.07	0.7222
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	16.97	0.7759
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	17.88	0.7869
AT5G53880			unknown protein		Potri.001G398700 [exp]	20.04	0.7826
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.005G232600 [exp]	22.13	0.7214	GAL1.7

Compare expression of checked genes

Potri.004G206600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.