Plant FIBer expression Database

Potri.004G206650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G174800
[exp]
103 / 4e-27 AT1G77680 1078 / 0.0 Ribonuclease II/R family protein (.1)
Potri.002G086400
[exp]
50 / 2e-08 AT1G77680 1062 / 0.0 Ribonuclease II/R family protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G206650.1 pacid=42794613 polypeptide=Potri.004G206650.1.p locus=Potri.004G206650 ID=Potri.004G206650.1.v4.1 annot-version=v4.1
ATGGTGGTTGAGGGGGGTGAGGATAGTGTTGATAAGGAAAAGAAGAAGAATAGGCGCCGATCTAATCGCCGATCCAAACGAAACCCTCCCAATCCAGCCA
ATGGAAAAGCTGGTGGTAGTCGCCAAGGTAAAAGTAAACTGAACATGGATGGTAAGTATGCTGATTTTGGAAATTCCTTGGTTCCTCATAAGGGGTTTGA
TTACGAGTACAGTTCATGTGCTGGTGAAGATGTTCATGATGAACTGAATGGGCTAGTGAGTTATATATTTTTTTTTGGGTTAACCCGAGTCAACCCATCT
GACCCGTGA
AA sequence
>Potri.004G206650.1 pacid=42794613 polypeptide=Potri.004G206650.1.p locus=Potri.004G206650 ID=Potri.004G206650.1.v4.1 annot-version=v4.1
MVVEGGEDSVDKEKKKNRRRSNRRSKRNPPNPANGKAGGSRQGKSKLNMDGKYADFGNSLVPHKGFDYEYSSCAGEDVHDELNGLVSYIFFFGLTRVNPS
DP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G206650
[exp]
0 1
AT5G03800 EMB166, EMB175,... embryo defective 1899, EMBRYO ... Potri.016G096400
[exp]
4.24 0.8329
AT5G07900 Mitochondrial transcription te... Potri.012G046700
[exp]
7.14 0.8298
AT1G79020 Enhancer of polycomb-like tran... Potri.014G000600
[exp]
10.72 0.8244
AT4G16510 YbaK/aminoacyl-tRNA synthetase... Potri.001G122501
[exp]
11.66 0.8208
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.011G024800
[exp]
11.83 0.8411
AT2G25970 KH domain-containing protein (... Potri.006G231800
[exp]
12.00 0.7954
AT2G42280 bHLH bHLH130 basic helix-loop-helix (bHLH) ... Potri.016G050500
[exp]
15.32 0.7805
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G038400
[exp]
16.43 0.8195
AT3G24560 RSY3 RASPBERRY 3, Adenine nucleotid... Potri.018G081500
[exp]
17.02 0.7927
AT1G10510 EMB2004 embryo defective 2004, RNI-lik... Potri.008G193700
[exp]
20.97 0.8044

Potri.004G206650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.