Plant FIBer expression Database

Potri.004G206900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38240 711 / 0 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G168000
[exp]
840 / 0 AT4G38240 692 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001389
[exp]
725 / 0 AT4G38240 684 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
Lus10022994
[exp]
721 / 0 AT4G38240 682 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF03071 GNT-I GNT-I family
Representative CDS sequence
>Potri.004G206900.4 pacid=42795804 polypeptide=Potri.004G206900.4.p locus=Potri.004G206900 ID=Potri.004G206900.4.v4.1 annot-version=v4.1
ATGAGAAAAATAAGATGCGATTACCGATGCCTTCTTCTGATAGCAGCCGTAGTCGCATTCTTCTACATCCAGATGCGGCTATTTGCGACGCAATCAGAGT
ACGCAGATCGGCTTGCTGTTGCGCTTGAATCAGAGAATCATTGCACTTCTCAATCGCGATTACTTATTGATCAAATTAGCATTCACCAATCCAATATTGT
TTCTCTTCAAGAACAAAATAGACGTCAAGCCGAAGAGTGTAGACAGCTCAAGGCGCTTCTCGATGATCTTGAAAGAAAAGGCGTTCGAAAAGTGGTTGAC
AAGGCACAGGCACCAGTGGCAGCCGTTGTGATCATGGCCTGCAATCGTGCTGATTATTTACAACGGACAATTGAGTCTATTTTGAAGTATCAAAGCTCTG
TTGCTTCGAAGTATCCACTTTTTGTGTCTCAGGATGGATCAGACCCAAATGTAAGAAGCAAGGCTATGAGTTATGATCAGCTAATGTACATTCAGCACTT
AGATTCTGAACCAGTACAAACAGAAAGACCTGGGGAATTGATTGCATACTACAAGATTGCAAGGCATTACAAATGGGCAATGGATCAATTATTCTACAAG
CATAATTTCAGCCGAGTAATCATACTTGAAGACGATATGGAAATCGCCCCTGATTTTTTTGATTACTTTGAGGCTGCTGCAGCTCTTCTTGAAAAGGATA
AGTCCATCATGGCTGTTTCTTCATGGAATGACAATGGACAAAAGCAGTTTGTGCATGATCCTTATGAACTTTATCGGTCAGATTTCTTTCCTGGACTTGG
CTGGATGCTGACTAAATCTATTTGGGACGAACTATCCCCTAAATGGCCAAAAGCTTACTGGGATGATTGGTTGAGATTAAAGGAGAATCATAAAGGTCGA
CAGTTCATTCGTCCAGAAGTATGCCGAACATATAACTTCGGTGAGCATGGCTCAAGTTTAGGGCAGTTTTTCCAGCAATATCTCCAGCCTATTAAACTGA
ACAATGTAAAGGTTGATTGGAAGGCAAAGGATTTAAGCTACCTGACAAAGGACAATTATACAAAGCATTTTGCCGACATTGTGAGAAAAGCTAAACCTGT
CCATGGAACTGATGCTGTTCTTAAGGCCTATAATATAGAGGGTGATGTGCGTATCCAGTACAGGGACCAACCAGACTTTGAATGGATTGCACACCAGTTT
GGTATTTTTGAAGAGTGGAAGGATGGAATACCAAGGACATCATTTAAAGGAGTAGTTGTTTTCAGATACCATACAACAAGACGTATATTCCTTGTTGGTC
CAGAATCTCTGAGGCAACTTGGGATCGAAGATGCTTGA
AA sequence
>Potri.004G206900.4 pacid=42795804 polypeptide=Potri.004G206900.4.p locus=Potri.004G206900 ID=Potri.004G206900.4.v4.1 annot-version=v4.1
MRKIRCDYRCLLLIAAVVAFFYIQMRLFATQSEYADRLAVALESENHCTSQSRLLIDQISIHQSNIVSLQEQNRRQAEECRQLKALLDDLERKGVRKVVD
KAQAPVAAVVIMACNRADYLQRTIESILKYQSSVASKYPLFVSQDGSDPNVRSKAMSYDQLMYIQHLDSEPVQTERPGELIAYYKIARHYKWAMDQLFYK
HNFSRVIILEDDMEIAPDFFDYFEAAAALLEKDKSIMAVSSWNDNGQKQFVHDPYELYRSDFFPGLGWMLTKSIWDELSPKWPKAYWDDWLRLKENHKGR
QFIRPEVCRTYNFGEHGSSLGQFFQQYLQPIKLNNVKVDWKAKDLSYLTKDNYTKHFADIVRKAKPVHGTDAVLKAYNIEGDVRIQYRDQPDFEWIAHQF
GIFEEWKDGIPRTSFKGVVVFRYHTTRRIFLVGPESLRQLGIEDA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Potri.004G206900
[exp]
0 1
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Potri.018G039200
[exp]
5.00 0.8595
AT3G15395 unknown protein Potri.001G402000
[exp]
5.65 0.8566
AT4G34960 Cyclophilin-like peptidyl-prol... Potri.004G173500
[exp]
10.00 0.8434
AT5G52070 Agenet domain-containing prote... Potri.008G163500
[exp]
11.00 0.8279
AT2G19450 RDS1, DGAT1, AT... TRIACYLGLYCEROL BIOSYNTHESIS D... Potri.006G147600
[exp]
12.84 0.7939
AT3G58130 N-acetylglucosaminylphosphatid... Potri.012G041700
[exp]
13.26 0.8471
AT1G77350 unknown protein Potri.019G066600
[exp]
13.85 0.8524
AT4G14660 NRPE7 RNA polymerase Rpb7-like, N-te... Potri.010G077200
[exp]
13.85 0.8194
AT1G67350 unknown protein Potri.003G173000
[exp]
17.66 0.8371
AT1G12390 Cornichon family protein (.1) Potri.003G116400
[exp]
19.97 0.8034

Potri.004G206900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.