Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17270 479 / 3e-172 PHT3;3 phosphate transporter 3;3 (.1) AT3G48850 334 / 5e-114 PHT3;2 phosphate transporter 3;2 (.1) AT5G14040 331 / 7e-113 PHT3;1 phosphate transporter 3;1 (.1) AT1G07030 86 / 4e-19 Mitochondrial substrate carrier family protein (.1) AT2G30160 82 / 1e-17 Mitochondrial substrate carrier family protein (.1) AT3G53940 77 / 1e-15 Mitochondrial substrate carrier family protein (.1) AT2G37890 74 / 8e-15 Mitochondrial substrate carrier family protein (.1) AT5G58970 72 / 3e-14 ATUCP2 uncoupling protein 2 (.1.2) AT3G54110 71 / 7e-14 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT2G22500 71 / 7e-14 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098800 [exp] 475 / 2e-170 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.017G060800 [exp] 331 / 1e-112 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 325 / 1e-110 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 322 / 2e-109 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.001G322300 [exp] 321 / 5e-109 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.009G077600 [exp] 82 / 2e-17 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 81 / 3e-17 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 81 / 3e-17 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.016G119500 [exp] 76 / 2e-15 AT5G01340 542 / 0.0 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026554 [exp] 508 / 0 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10013839 [exp] 499 / 2e-179 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10035975 [exp] 405 / 5e-140 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10016720 [exp] 334 / 5e-114 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10041519 [exp] 334 / 9e-114 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 331 / 2e-112 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10036014 [exp] 328 / 1e-111 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10026395 [exp] 81 / 6e-17 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 79 / 2e-16 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10016686 [exp] 76 / 2e-16 AT2G17270 57 / 1e-16 phosphate transporter 3;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.004G207200.2 pacid=42795099 polypeptide=Potri.004G207200.2.p locus=Potri.004G207200 ID=Potri.004G207200.2.v4.1 annot-version=v4.1 ATGGAGGAGATGAGAGGGGCTCGACAAGGCGGGAGCAGTCTTGTGAAGGAGTTCTCACCTGCCTACTATGGGCTTTGTGCCGTTGGAGGCATGCTCAGCG CCGGTACCACTCACCTCGCTATCACTCCTCTTGATGTTTTAAAAGTCAATATGCAGGCGAATCCAATCAAGTATAACAGTATTTTGTCAGGGTTCTCTAC CCTCTTGAAAGAACAAGGCCCTTCTTCCCTTTGGAGAGGCTGGTCTGGCAAGCTCTTTGGATATGGTGTTCAAGGTGGCTGCAAATTTGGCCTTTACGAA TACTTTAAGAGGCTTTACTCAGATGTCTTGATGGATCAAAACAGGAATTTCGTATTCTTTCTCAGCAGTGCATCTGCTCAAGTATTTGCCGACGTGGCTC TTTGTCCATTTGAAGCTGTAAAAGTTCGTGTCCAAACACAGCCTACATTTGCCAATGGCTTGGCTGATGGGTTTCCAAAACTCTATAAAGCTGAAGGTCT CACTGGTTTTTACCGAGGACTTGTCCCACTTTGGGGCCGCAACCTTCCATTCTCAATGGTAATGTTTACAACATTTGAGCAGTCAGTTGACCTAATATAT CGCAACGTTATTCAACGGAGAAAAGAAGACTGCTCCAGAAGTCAACAGCTTGGTGTGACATGTTTGGCTGGCTATGTAGCTGGAGCTGTTGGTACTGTGA TTTCTAATCCAGCTGACAATGTTGTTACCTCTCTTTACAATAAAAAGGCTGAGAATGTGCTTCAGGCTGTGAAAAATATTGGACTAGCTAACCTTTTCAC TCGAAGTCTTCCTATTCGGATCGCAATCGTGGGGCCTGTTGTTACTTTGCAGTGGTTCTTCTATGACACCATCAAAGTATCAAGTGGACTGCCTACCACT GGAGGGCTTGGCAGACATCAGGAAGCCACCGATCTGTTAGCTTAA
AA sequence Show only first row Show all	>Potri.004G207200.2 pacid=42795099 polypeptide=Potri.004G207200.2.p locus=Potri.004G207200 ID=Potri.004G207200.2.v4.1 annot-version=v4.1 MEEMRGARQGGSSLVKEFSPAYYGLCAVGGMLSAGTTHLAITPLDVLKVNMQANPIKYNSILSGFSTLLKEQGPSSLWRGWSGKLFGYGVQGGCKFGLYE YFKRLYSDVLMDQNRNFVFFLSSASAQVFADVALCPFEAVKVRVQTQPTFANGLADGFPKLYKAEGLTGFYRGLVPLWGRNLPFSMVMFTTFEQSVDLIY RNVIQRRKEDCSRSQQLGVTCLAGYVAGAVGTVISNPADNVVTSLYNKKAENVLQAVKNIGLANLFTRSLPIRIAIVGPVVTLQWFFYDTIKVSSGLPTT GGLGRHQEATDLLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.004G207200 [exp]	0	1
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Potri.006G069700 [exp]	1.73	0.9489
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	1.73	0.9562
AT5G64230			unknown protein		Potri.017G053200 [exp]	3.31	0.9380
AT3G25950			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.008G178800 [exp]	3.46	0.9425
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095600 [exp]	3.46	0.9539
AT4G14450		ATBET12	unknown protein		Potri.010G073900 [exp]	4.00	0.9278	Pt-ATBET12.2
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	4.47	0.9473
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.015G134600 [exp]	4.79	0.9194	Pt-GA20.2,GA20ox8
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.004G149500 [exp]	6.16	0.9076
AT5G04830			Nuclear transport factor 2 (NT...		Potri.010G241700 [exp]	6.92	0.9193

Compare expression of checked genes

Potri.004G207200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.