Plant FIBer expression Database

Potri.004G207700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35360 580 / 0 Uncharacterised conserved protein (UCP030210) (.1)
AT2G17340 572 / 0 Uncharacterised conserved protein (UCP030210) (.1)
AT2G17320 550 / 0 Uncharacterised conserved protein (UCP030210) (.1)
AT4G32180 171 / 3e-47 ATPANK2 pantothenate kinase 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G169000
[exp]
637 / 0 AT4G35360 595 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Potri.015G077300
[exp]
175 / 2e-48 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3)
Potri.012G081600
[exp]
174 / 4e-48 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013846
[exp]
574 / 0 AT4G35360 619 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Lus10026563
[exp]
508 / 0 AT4G35360 555 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Lus10009520
[exp]
182 / 6e-51 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3)
Lus10020341
[exp]
108 / 1e-25 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01937 DUF89 Protein of unknown function DUF89
Representative CDS sequence
>Potri.004G207700.1 pacid=42795067 polypeptide=Potri.004G207700.1.p locus=Potri.004G207700 ID=Potri.004G207700.1.v4.1 annot-version=v4.1
ATGGAGAGCGAAACGGAGATGGTAGCTTTTCCGTTGCTATTGACGCCGATCGAAACAAATTACAGAGCATGCACCATTCCTTACCGCTTCCCATCAGACA
ATCCTAAGAAAGCAACCCCAACAGAGCTCCAGTGGATTAACGTCTTTCTCAACTCCATTGCCTCCTTCAAGAAACGTGCTGAAACTGATTCCACTGTTCC
TGATGCTCCTCTTAGAGCTGAGAAATTTGCTCAGAGGTATGGTGATATACTGGAGGACTTCAAGAAAGATCCAGAAAGCCATGGCGGCCCTCCTGATGGC
ATTCTTCTCTGCAGACTGCGGGAGCTAATCCTTCGAGAGTTGGGATTCATAGACATATTCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCTATATCTT
TATTTAAGAATGTAGTTCAGCTTAATGATGCTATTGTAGATGAGCCCAAGCGCCTAGAAAATCTTGTCAGAGGAATATTTGCTGGGAATATCTTTGACCT
TGGTTCCGCAGAGCTCGCTGAGGTTTTCTCAAGGGATGGAATGTCCTTTTTGGCTAGTAGTCAAAATCTTGTCCCTCGACCCTGGGTCATTGATGACTTG
GACACCTTTAAAGTGAAATGGAGCAAGAAAACATGGAAAAAGGTTGTCATTTTTGTTGATAATTCTGGTGCAGATATAGTTTTGGGTATTTTGCCCTTTG
CAAGAGAGCTACTGCGATGTGGATCTCAGGTTGTGTTGGCTGCCAATGACATGCCTTCTATCAATGACGTCACTTACACTGAACTGATAGAGATTATAGC
AAAGTTGAAAGATGAAAATGGACAGCTCATGGGTGTTGATATGTCAAATCTTCTGGTAGCCAATTCTGGAAATGATTTGCCGGTTATTGATCTAACAAGA
GTATCCCAAGTGCTAGCCTATCTAGCAAGTGATGCAGACCTAGTAATATTGGAAGGAATGGGTCGTGGGATTGAGACAAATCTTTATGCTCAGTTTAAAT
GCGACTCTCTCAAGATTGGGATGGTGAAACATCCAGAGGTTGCTCAGTTCCTTGGAGGACGGCTTTATGATTGTGTTTTCAAGTATAGTGAAGCTGTGAG
TTAA
AA sequence
>Potri.004G207700.1 pacid=42795067 polypeptide=Potri.004G207700.1.p locus=Potri.004G207700 ID=Potri.004G207700.1.v4.1 annot-version=v4.1
MESETEMVAFPLLLTPIETNYRACTIPYRFPSDNPKKATPTELQWINVFLNSIASFKKRAETDSTVPDAPLRAEKFAQRYGDILEDFKKDPESHGGPPDG
ILLCRLRELILRELGFIDIFKKVKDEENAKAISLFKNVVQLNDAIVDEPKRLENLVRGIFAGNIFDLGSAELAEVFSRDGMSFLASSQNLVPRPWVIDDL
DTFKVKWSKKTWKKVVIFVDNSGADIVLGILPFARELLRCGSQVVLAANDMPSINDVTYTELIEIIAKLKDENGQLMGVDMSNLLVANSGNDLPVIDLTR
VSQVLAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYSEAVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35360 Uncharacterised conserved prot... Potri.004G207700
[exp]
0 1
AT5G09450 Tetratricopeptide repeat (TPR)... Potri.017G048500
[exp]
5.65 0.7698
Potri.012G073800
[exp]
6.92 0.7604
AT3G17430 Nucleotide-sugar transporter f... Potri.008G214300
[exp]
7.00 0.6855
AT1G68260 Thioesterase superfamily prote... Potri.010G123102
[exp]
10.14 0.7805
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Potri.012G137800
[exp]
10.95 0.7351 MP2.4
AT3G20390 endoribonuclease L-PSP family ... Potri.001G435700
[exp]
13.85 0.7637
AT5G58490 NAD(P)-binding Rossmann-fold s... Potri.009G076300
[exp]
13.85 0.7481 Pt-CCR.7
AT5G01090 Concanavalin A-like lectin fam... Potri.016G107200
[exp]
17.97 0.7238
AT3G01980 NAD(P)-binding Rossmann-fold s... Potri.017G067332
[exp]
20.71 0.7724
AT1G06475 unknown protein Potri.005G203800
[exp]
21.44 0.7536

Potri.004G207700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.