Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03880 939 / 0 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 506 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 487 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 492 / 2e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 478 / 2e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 471 / 5e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 466 / 3e-156 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 469 / 1e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 462 / 3e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 463 / 4e-154 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 538 / 2e-180 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 520 / 7e-175 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 508 / 1e-173 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 509 / 2e-172 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 504 / 2e-170 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 505 / 2e-169 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 497 / 1e-168 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 502 / 1e-165 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 487 / 5e-165 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001617 [exp] 899 / 0 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022974 [exp] 567 / 0 AT2G03880 542 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 501 / 6e-170 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 499 / 1e-168 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 498 / 3e-168 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 499 / 2e-165 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038839 [exp] 486 / 1e-164 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 497 / 2e-164 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022629 [exp] 482 / 2e-162 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 483 / 5e-158 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.004G208000.2 pacid=42795620 polypeptide=Potri.004G208000.2.p locus=Potri.004G208000 ID=Potri.004G208000.2.v4.1 annot-version=v4.1 ATGAACTTAATTTGTAATTCTCTCATTTCAAAGCCCACTAATTTTAAAACCTGCCCGCTTCTGCTTCTTCGAATTAAACCTGAACACTACTACGCTATGA AAACAATTTCAAGCAAGGTGGTGAAGAAATTTATAACAAAGCCACCGTCTTTGCTATCATCAACTGCTTCTCTCACCTCCATAGCGTCCTTCAATGTCTC CAACAAGGCATTCCCATCTTCCCTACTCGATGATTTCACCAAGTTTTGTTATCAAAGAGACTTGCCCAGAGCCATGCAAGCCTTGGAACTCATGCACACA CATTGTATACGGGCTGATTGTATTACTTACTCAGAGCTAATCAAGTGCTGCCTGGCCCGTCGAGCTATTCAACATGGCAAACGTATTCACGTCCACCTCA TCTCCAACGGGCACGTGCCCAAAACGTTTTTAATCAACATTTTGATCAACATGTATGTCAAGTTTGGTCTTCTACACGATGCACAGGACGTGTTTGACAA AATGCCTGATAGAAATGTAGTTTCTTGGACAACAATGATATCAGCTTATTCTGCTGCTAAATTAAATGATAAGGCGTTGGAGTTCTTGGTTTTGATGTTA AGAGAAGGTGTGCGACCGAATATGTTCACGTACTCTTCGGTTTTGAGAGCCTGTGATGGGCTGTTTAATCTTAGGCAGTTGCATTGTTGTATAATTAAGA TTGGTTTAGACTCTGATGTGTTTGTTAGGAGTGCTTTGATTGATGTTTATTCCAGATGGGGTGAATTGGAGAATGCACTGCGTGTTTTTGATGAGATGGT GACTGGGGATTTGGTTGTTTGGAGTTCGATAATTGCAGGGTTTGCTCAAAATAGCGATGGTGATGAAGCGTTGAGGCTTTTTAAGAGAATGAAGAGAGCT GGGTTCTTAGCCCAACAAACTACGCTAACTAGTGTTTTGAGAGCTTGTACTGGGTTAGCATTGTTAGAATTGGGGAGGCAAGTCCATGTTCATGTGTTGA AGTACGATCAAGATTTGATTTTGAATAATGCTCTTTTGGATATGTATTGCAAGTGTGGAAGTTTGGAAGATGCTAATGCTGTTTTTGTTCGGATGGTAGA GAAGGATGTGATCTCCTGGAGTACCATGATTGCTGGTTTGGCACAAAATGGATACAGCAAAGAGGCCCTGAAGTTGTTCGAGTCGATGAAAGTTTTGGGG ATAAAACCAAACTACGTAACTATTGTTGGTGTTCTTTTTGCTTGCAGCCATGCTGGTCTTGTGGAAGAAGGCCTGTACTATTTCCATTCAATGAAAGAGC TGTTTGGGATTGATCCGGGAAGAGAACACTACGGATGCATGATTGACCTTCTTGGAAGAGCTGGACGGCTCAGTGAAGCTGTTGACTTGATAAATGAAAT GGAATGTGAACCAGACGCTGTTACATGGAGGGCTTTGCTTAATGCATGCAGGGTCCACCGGAATGTGGATGTAGCTATTCATGCTGCCAAACAAATTCTA AGATTGGATCCCCAGGATGCTGGAACCTATGTATTGTTATCCAACATTTATGCAAATACTCAAAGGTGGAATGATGTTGCAGAAGTTAGGAGAACCATGA CTAACAGAGGAATCAAGAAAGAACCAGGATGTAGCTGGATTGAAGTGAGTAAGCAGATTCATGCTTTCATTTTAGGAGATAGATCACATCCACAAATCCG TGAAATCAACATTCAGCTGAACCAGTTAATTTATAAACTCATGGGAGTCGGCTATGTTCCTGACACCAATTTTGTCTTGCAAGATCTGGAGGGGGAGCAA ATGCAAGACTCCCTAAGATACCACAGTGAGAAACTGGCAATTGTATTTGGTTTGATGAGTTTGCCCAGGGGTCAAACTATAAGAATCAGAAAAAATCTGA GGATTTGTGGAGACTGTCATCTCTTTACAAAACTTCTAGCAAAGATGGAGCAGCGGATTATTGTTATCAGAGATCCCGTTCGATACCATCATTTCCAAGA CGGGCTTTGTTCTTGTGGAGATTTTTGGTGA
AA sequence Show only first row Show all	>Potri.004G208000.2 pacid=42795620 polypeptide=Potri.004G208000.2.p locus=Potri.004G208000 ID=Potri.004G208000.2.v4.1 annot-version=v4.1 MNLICNSLISKPTNFKTCPLLLLRIKPEHYYAMKTISSKVVKKFITKPPSLLSSTASLTSIASFNVSNKAFPSSLLDDFTKFCYQRDLPRAMQALELMHT HCIRADCITYSELIKCCLARRAIQHGKRIHVHLISNGHVPKTFLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLML REGVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRA GFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLG IKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQIL RLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQ MQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	1.41	0.9469
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	3.74	0.9459
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	4.00	0.9423
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	4.58	0.9445
AT4G20010		PTAC9, OSB2	ORGANELLAR SINGLE-STRANDED DNA...		Potri.001G394200 [exp]	5.47	0.9399
AT1G30680			toprim domain-containing prote...		Potri.001G461300 [exp]	5.47	0.9111
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	5.91	0.9418
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	8.00	0.9367
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	9.53	0.9375
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	9.94	0.9345

Compare expression of checked genes

Potri.004G208000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.