Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38210 357 / 2e-124 ATHEXPALPHA1.23, ATEXP20, ATEXPA20 EXPANSIN 20, expansin A20 (.1) AT3G03220 275 / 1e-91 ATHEXPALPHA1.22, ATEXP13, ATEXPA13 EXPANSIN 13, expansin A13 (.1) AT2G39700 274 / 2e-91 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G37640 273 / 3e-91 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 272 / 1e-90 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 271 / 3e-90 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G05290 265 / 4e-88 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 265 / 9e-88 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G03090 261 / 1e-86 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G56320 261 / 2e-86 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169500 [exp] 510 / 0 AT4G38210 335 / 5e-117 EXPANSIN 20, expansin A20 (.1) Potri.009G031800 [exp] 281 / 4e-94 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G240900 [exp] 280 / 6e-94 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.008G057100 [exp] 279 / 2e-93 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.010G202500 [exp] 275 / 7e-92 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.008G088300 [exp] 267 / 5e-89 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.004G080200 [exp] 268 / 8e-89 AT3G03220 409 / 8e-146 EXPANSIN 13, expansin A13 (.1) Potri.019G057500 [exp] 266 / 2e-88 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.010G167200 [exp] 266 / 3e-88 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026566 [exp] 341 / 1e-117 AT4G38210 288 / 1e-98 EXPANSIN 20, expansin A20 (.1) Lus10013849 [exp] 330 / 3e-113 AT4G38210 279 / 7e-95 EXPANSIN 20, expansin A20 (.1) Lus10040801 [exp] 282 / 2e-94 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 281 / 4e-94 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040286 [exp] 273 / 4e-91 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10034227 [exp] 273 / 5e-91 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10023407 [exp] 271 / 2e-90 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10024388 [exp] 270 / 9e-90 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10010454 [exp] 268 / 5e-89 AT3G03220 408 / 2e-145 EXPANSIN 13, expansin A13 (.1) Lus10008603 [exp] 268 / 6e-89 AT2G40610 397 / 2e-141 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.004G208300.1 pacid=42794324 polypeptide=Potri.004G208300.1.p locus=Potri.004G208300 ID=Potri.004G208300.1.v4.1 annot-version=v4.1 ATGATAGACCAAAGCTACCCTTCCTCTCGGGCTTGCTGCACGTCCCTACATTTTGGACTACGGTCTCCCAAAGAGCCTATTTGTCAAAATTTCACAGTTT CGTCTAAGGGGTGGCCATCTAACCAACAAAGCTATCTTCATTTCAGCAAGGAGATTCGGGTCATTTCCCGAAGAAAAGGGTGGTCTTTCTCTTCACTCAA GACCATAATTTCACAGAGAAGAGAAGAAAGGGAAAAAACAAGAAGAAAAGAATCTCATCAAGTACAAATCAGAATTCTCATAGTCGTTGCTTATCAAATG GGTGCTCTTAAAGCCATGCTTCTCTACTTGATTATACACCAGACATGGAAGATCACCGCTGATGATGAGGAATGGAAGTCTGCCACTGCAACATACGTTA AGGAAACAAATGGATCGATCGTTGTAGAAGGTGCTTGTGGGTATGCGGACCTTCACAAGGCCACCTATGGAAAGTACAGTGCTGGACTAAGTAGCATGCT GTTCAACAGAGGGAGTACCTGTGGGGCTTGCTTCGAGGTCAGATGTGTCGACCACATCTTATGGTGCCTGCAGGGTAGCCCCTCGGTCATTCTCACTGCA ACAGATTTCTGTCCTCCAAATTACGGGCTTTCGGCGGATTATGGTGGCTGGTGTAATTTCCCGAAAGAACACTTCGACATGTCAGAGGCAGCATTTACTG AAATCGCAGAGAAAAAAGCCGATATTGTGCCAGTTCAACACAGAAGGGTGAAGTGTGAAAGAAGGGGTGGGCTGAGATTCACAGTGAGTGGAAATTTTCA CTTCTATCAAGTCCTGATCTCCAATGTGGGGTTGGATGGTGAGGTGATTGCTGTGAAAGTGAAGGGTTCGAAAACAGCATGGATACCTATGGCAAGAAAC TGGGGACAAAACTGGCAATCTAATGTCAACCTTATTGGACAGCCTCTATCTTTCGAGGTTACAACCAGCAGCAGAAAAACACTCACATCTTACAATGTTG CACCAGCAAACTGGCAATTCGGTCAGACATTTGAAGGCAAACAATTCTAG
AA sequence Show only first row Show all	>Potri.004G208300.1 pacid=42794324 polypeptide=Potri.004G208300.1.p locus=Potri.004G208300 ID=Potri.004G208300.1.v4.1 annot-version=v4.1 MIDQSYPSSRACCTSLHFGLRSPKEPICQNFTVSSKGWPSNQQSYLHFSKEIRVISRRKGWSFSSLKTIISQRREEREKTRRKESHQVQIRILIVVAYQM GALKAMLLYLIIHQTWKITADDEEWKSATATYVKETNGSIVVEGACGYADLHKATYGKYSAGLSSMLFNRGSTCGACFEVRCVDHILWCLQGSPSVILTA TDFCPPNYGLSADYGGWCNFPKEHFDMSEAAFTEIAEKKADIVPVQHRRVKCERRGGLRFTVSGNFHFYQVLISNVGLDGEVIAVKVKGSKTAWIPMARN WGQNWQSNVNLIGQPLSFEVTTSSRKTLTSYNVAPANWQFGQTFEGKQF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.004G208300 [exp]	0	1
AT1G65810			P-loop containing nucleoside t...		Potri.004G077700 [exp]	1.73	0.8758
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	3.16	0.8224
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.017G112100 [exp]	3.46	0.8061
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.014G036900 [exp]	6.92	0.7975
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Potri.001G197000 [exp]	7.61	0.7450
AT2G30000			PHF5-like protein (.1)		Potri.001G277800 [exp]	9.21	0.7720
AT1G65810			P-loop containing nucleoside t...		Potri.004G077100 [exp]	9.48	0.7771
					Potri.014G013200 [exp]	10.58	0.7451
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024600 [exp]	11.18	0.8006
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	12.16	0.8029

Compare expression of checked genes

Potri.004G208300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.