Potri.004G208400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38200 2354 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT4G35380 2163 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT3G60860 1580 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT1G01960 1558 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1)
AT3G43300 775 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
AT5G39500 299 / 4e-82 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1)
AT1G13980 263 / 7e-71 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
AT5G19610 204 / 7e-53 GNL2 GNOM-like 2 (.1)
AT5G27970 56 / 4e-07 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G169800 2994 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.014G070600 1675 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.002G149200 1652 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.006G216900 792 / 0 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Potri.017G078900 303 / 3e-83 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Potri.017G078800 270 / 6e-73 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Potri.018G075300 222 / 3e-58 AT5G19610 1796 / 0.0 GNOM-like 2 (.1)
Potri.013G035100 63 / 2e-09 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022983 2464 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10001620 2422 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10009300 1677 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10015863 1229 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10009244 1059 / 0 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10009803 774 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Lus10038084 681 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Lus10026627 267 / 4e-72 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10030432 265 / 3e-71 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10036789 261 / 4e-70 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01369 Sec7 Sec7 domain
PF09324 DUF1981 Domain of unknown function (DUF1981)
PF16206 Mon2_C C-terminal region of Mon2 protein
Representative CDS sequence
>Potri.004G208400.1 pacid=42795326 polypeptide=Potri.004G208400.1.p locus=Potri.004G208400 ID=Potri.004G208400.1.v4.1 annot-version=v4.1
ATGTCTGCTTCGCAAACCCTTGGCGGTCCTTCTCGCTGCGGCCGTTCCTTAGGTCCTTCTCTCGACAAGATCGTTAAAAACGCCGCCTGGAGGAAGCACT
CTCACCTCGTTTCCTCCTGCAAATCGGTCCTCGACAAGCTCGAATCACTCACGGATTCTAATTCTCACTCTCCTCTCTTCGGGCTCTCCCCTTCGGATGC
CGAATTCGTTCTCCATCCAATTCTTCTCGCCTTAGATTCCGCTTACGTCAAGGTCGTGGACCCCGCACTCGAATGCTTGTTCAAATTGTTTTCCTCAGGC
CTGATTCGAGGTGAGATCGATAATGGTTCAAAAAATGTGATCATTTTTAAGATAATCGAGAGTGTTTGTAAGGTTTGTGGAATTGGTGACGAAGCTGTTG
AGCTTTCTGTGCTTAGAGTTTTGCTCTCTGCTGTTCGATCTCCTTGTGTTTTGATTCGCGGTGAATGTTTAGTGCACGTTGTTAGGACTTGTTATAATGT
TTATCTTGGTGGATTGACTGGGACCAATCAGATCTGTGCGAAATCTGTACTTGCACAGGTAATGCTCATTGTTTTTACTAGAGTTGAGGAGGATTCTATG
GATGTCAATGTTAAACCGGTTTCTGTTAGTGAAATGTTACTGTTTACTGATAAGAATTTGAATGAAGGGAGTTCTATTCATTTTTGTCAGAATTTTGTTA
ATGAGGTTATGACGGCAAGTGAAGGGGTTCCAGATGATAAGTTGTTGCTGTTGCATAGTCCGCCTTCTGATAAACTCCAAAATGGTAGTGGAGGTGCCGG
TGATGATAATGATAAAGTAGGTGAAGGGGATCATAAAAGTGAATTAAGGGATAAGGAAGCAAATGGTGAAGCTGAAACCGATGGTGGTGTGGGTGGTAGT
GGTGGTGTTGAAGCTGAGGGGAGTAAGATTAGGGAGGATGGGTTTCTTCTTTTTAGGAATTTGTGCAAATTGTCAATGAAGTTCTCATCGCAGGAGACCC
CAGATGATCAAATTCTTTTGAGAGGGAAGATTTTGTCTCTTGAGTTGCTTAAGGTGATCATTGACAATGGCGGTCCAATCTGGCGCACCGATGAAAGGTT
TCTCAACATTATCAAGCAATTCCTATGCTTGTCATTGATAAAGAACAGTACGTTGTCAGTTATGGCTATTTTCCAGCTTCAGTGTTCCATTTTTATGATG
CTGTTAGTGAAATTCAGATCTGGATTGAAGGAGGAAATTGGAATATTCTTTCCCATGCTTGTCCTTCGAGTGCTTGAGAATGTTAACCAGCCTAGCTTCT
TGCAGAAAATGACTGTCCTGAATCTTTTGGACAAGATCAGCCAAGATTCCCAGATCATTATTGATATTTTTGTAAACTATGACTGCGATGTGGATGCTCC
AAACATATATGAAAGGATTGTCAATGGCCTTCTGAAAACTGCTCTAGGACCCCCTCCTGGTTCAACAACAACTTTGTCTTCGGTTCAGGATATTACTTTT
AGGCATGAATCTGTGAAGTGCTTGGTTAGCATCATCAGGTCAATGGGTGCATGGATGGATCAACAGCTGAGAATTGGAGATTCCTACTTGCCTAAGATCT
CTCAAAGTTCCACTTCAACTGAGAATCATTCAACTCTGAATGGAGAAGATGCAAGTGCTCCTGAGTATGATTTGCATCCAGAAGTGAACTCTGAAACATC
TGATGCTGCTACCCTTGAACAACGTCGGGCATATAAAATTGAACTCCAGAAAGGTATCTCCATATTCAATAGGAAACCTTCCAAGGGCATTGAGTTTCTG
ATAAATGCCAAAAAAGTTGGTGGTTCTCCAGAAGAAGTTGCTGCCTTCCTGAAAAACACTACTGGCCTAAATGAAACAGTGATTGGTGACTATTTAGGTG
AAAGGGATGAGTTTTGTTTGAGAGTTATGCATGCTTATGTAGACTCATTTAACTTCAAGGTGATGGGTTTTGGTGAAGCGATAAGGTTTTTCTTACGGGG
CTTCAGGTTACCCGGAGAAGCACAGAAGATTGATCGTATCATGGAAAAGTTTGCTGAGCGCTATTGTAAATGCAATCCAAATTCATTTACCAGTGCAGAT
ACTGCTTACGTTCTTGCATACTCTGTGATAATGCTCAATACAGATGCTCATAACAGCATGGTGAAAGATAAGATGAGCAAGGCTGATTTTATTCGGAACA
ACCGAGGAATAGATGATGGCAAGGATTTGCCTGAAGAGTATCTGGGTGCTCTTTATGATCACATTGTGAAAAATGAAATTAAGATGAGTGCAAATTCTTC
TGTTCCTCAAAGCAAGCAGGGTAACAGCTTAAATAAGCTATTAGGTTTGGATGGTATACTCAATCTAGTTACTGGGAAGCAGACTGAGGAAAAGGCTTTG
GGTGCAAATGGGCTTCTTATCAGGCATATCCAAGAGCAGTTCAAGGCGAAGTCAGGAAAATCAGAGTCTATTTATCATGTTGTAACAGATGCAGCGATTC
TGAGGTTTATGGTTGAGGTCTGCTGGGGTCCTATGCTGGCTGCTTTTAGTGTGACTCTTGATCAGAGTGATGATAGGCTTGCTGCCTCTCAGTGCTTACA
GGGGTTTCGATATGCTGTGCATGTTACTGCAGTCATGGGTATGCAGACCCAGAGAGATGCTTTTGTTACATCCGTGGCCAAGTTTACATATCTGCACTGT
GCTGCAGATATGAAGCAAAGAAATGTAGATGCTGTGAAGGCAATAATATCAATTGCCATTGAAGATGGAAATAATCTTCAGGATGCTTGGGAGCATATCT
TAACTTGCCTCTCCCGTATTGAGCATCTGCAACTGCTTGGAGAAGGTGCACCGCCTGATGCCTCTTATTTGACACCATCTAATGGGGAAACAGAAGAAAA
GGCACTGAAGTCAATGGGTTATCCTTCTCTAAAGAAAAAGGGAACACTCCAGAATCCAGCTGTAATGGCTATTGTTAGAGGGGGTTCATATGATAGCACC
ACTGTTGGAGTCAATTCTCCAGGACTAGTAACTCCAGAGCAGATCAATAACTTCATTTCAAATTTGAATTTGCTTGACCAGATTGGGAATTTTGAATTGA
ACCATGTGTTTGCTAATAGCCAAAGGTTGAACAGTGAAGCAATAGTAGCTTTTGTGAAAGCTCTTTGTAAAGTTTCAATATCTGAGTTGCAGTCTCCAAC
AGATCCTCGTGTATTTAGCCTTACGAAAATCGTAGAAATTGCGCATTATAATATGAACCGCATCAGATTAGTTTGGTCCCGCATATGGAATGTTCTCTCT
GAATTTTTTGTATCAGTTGGCTTGTCAGAAAATCTTTCTGTTGCTATTTTTGTGATGGATTCTCTGAGACAACTTGCTATGAAATTCTTAGAGCGCGAGG
AGTTGGCAAATTACAACTTCCAGAATGAATTTTTGAGGCCATTTGTGATTGTGATGCAGAAAAGCAGCTCTACAGAGATCAGGGAATTAATAGTTAGGTG
TATTTCACAGATGGTCCTTAGTCGTGTCAGTAATGTGAAATCTGGTTGGAAAAGTGTTTTTATGGTTTTTACTGTTGCTGCAGCTGATGAGCGGAAGAAT
GTTGTCTTGTTGGCATTTGAGACCATGGAAAAAATTGTCCGAGAGTACTTTCCTTATATAACAGAGACGGAGACAACAACTTTCACTGACTGTGTTAGAT
GCCTCACCACCTTCACAAATAGCAGATTTAATAGTGATGTGAGCCTCAATGCAATTGCATTTCTCCGATTCTGTGCTCTGAAACTGGCAGATGGAGGACT
TATTTGCAACGTAAAGAGCAGTGTTGATGATCCATCCATCCCAATAGTAGATGAAGTTGCTTCGGATGTAAACCCCAGTGACAAAGATGTTCATGTGTCC
TTTTGGATTCCTTTGCTAACAGGGTTATCGAAACTTACATCTGATCCCAGATCAGCTATTCGAAAGAGTGCTTTAGAAGTGCTATTTAACATTCTCAATG
ACCATGGTCATCTATTCTCACACTCATTTTGGACCACTGTTTTCAACTCTGCCATTTTCCCCATCTTCAATAGCTTCAGTGACATGAAAGATGTTAAAGA
TCAGGATTCACCAACTTCAGCACCACCTCATTCAGTAGGAAGTGCATGGGATTCTGAAACTTCTACAATCGCAGTCCAGTGTCTAGTATACCTATTTGTC
AACTTTTTCAACGTTGTTAGGTCTCAACTACAGAGTGTAGTATCTATATTGATGGGATTTATTAGGAGTCCTGTTAAGGGTCCTGCTAGCGCTGGGGTTG
CTGCATTGTTGCGTTTAATAGGTGAACTGGGCAGCAGGATTTCAGAAGATGAATATAGAGAGATTTTTCTATCTTTGAAGGAGGCCGCTGCATCATTGTT
ACCAGGTTTTATGAAGGTCTTAAGAATCATGGATGGGATTGAGATGCCTGAAAGCTCTCACCCTTTTGCGGATGCGGATGTGTCTTCTGATCATGGCTTC
ACAAATGATGATCTTGAGGATGACAATCTCCAAACTGCAGCATATGTGGTTTCAAGAGTGAAGAGTCATATTGCTGTGCAGCTACTTATTGTGCAGGTTG
TAAGTGATTTATACAAAGCAAACCAGCATCTCTTGTCAGCGGCCAATGTCAGAATTCTTATTGATATATTTTCCTCAATAGCATCCCATGCCCACCAGCT
GAATTCTGAGACGGACCTGCTGAAGAAACTGCTGAAAGCGTGCTATATAGCAGAGATATCTGATCCTCCAATGGTACATTTTGAAAATGAGTCCTACGAG
AAATACCTTGACTTCCTCCGAGATTTGCTAGATGATAACCCATCCATGTCTGAGGCATTGAACGTCGAGGCACAACTTGCAGCAGTGTGCGAAAAGATAT
TGCTGATTTATCTGAACTGTACTGGATTGCAGACCGTGCAGCAAGATCCCGCTAACAAGCCAGTGATACACTGGATTCTTCCTTCAGGTTCGGCCAAAAA
GGAAGAATTAGCAGCAAGGACTTCTTTGCTCTTGTCAGCTTTGCGGGTATTGAGTGGTTTAGAAAGCGATTCATTTAGGGGCTATGCCAGACAATTCTTT
CCTTTGTTGGTTGACCTTGTGCGGTGTGAGCACAGCTCAGGTGAAGTTCAGCGTATTCTGAGCGACATTTTCCGATCATGTATAGGCCCCATTATAATGG
GATGA
AA sequence
>Potri.004G208400.1 pacid=42795326 polypeptide=Potri.004G208400.1.p locus=Potri.004G208400 ID=Potri.004G208400.1.v4.1 annot-version=v4.1
MSASQTLGGPSRCGRSLGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLESLTDSNSHSPLFGLSPSDAEFVLHPILLALDSAYVKVVDPALECLFKLFSSG
LIRGEIDNGSKNVIIFKIIESVCKVCGIGDEAVELSVLRVLLSAVRSPCVLIRGECLVHVVRTCYNVYLGGLTGTNQICAKSVLAQVMLIVFTRVEEDSM
DVNVKPVSVSEMLLFTDKNLNEGSSIHFCQNFVNEVMTASEGVPDDKLLLLHSPPSDKLQNGSGGAGDDNDKVGEGDHKSELRDKEANGEAETDGGVGGS
GGVEAEGSKIREDGFLLFRNLCKLSMKFSSQETPDDQILLRGKILSLELLKVIIDNGGPIWRTDERFLNIIKQFLCLSLIKNSTLSVMAIFQLQCSIFMM
LLVKFRSGLKEEIGIFFPMLVLRVLENVNQPSFLQKMTVLNLLDKISQDSQIIIDIFVNYDCDVDAPNIYERIVNGLLKTALGPPPGSTTTLSSVQDITF
RHESVKCLVSIIRSMGAWMDQQLRIGDSYLPKISQSSTSTENHSTLNGEDASAPEYDLHPEVNSETSDAATLEQRRAYKIELQKGISIFNRKPSKGIEFL
INAKKVGGSPEEVAAFLKNTTGLNETVIGDYLGERDEFCLRVMHAYVDSFNFKVMGFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPNSFTSAD
TAYVLAYSVIMLNTDAHNSMVKDKMSKADFIRNNRGIDDGKDLPEEYLGALYDHIVKNEIKMSANSSVPQSKQGNSLNKLLGLDGILNLVTGKQTEEKAL
GANGLLIRHIQEQFKAKSGKSESIYHVVTDAAILRFMVEVCWGPMLAAFSVTLDQSDDRLAASQCLQGFRYAVHVTAVMGMQTQRDAFVTSVAKFTYLHC
AADMKQRNVDAVKAIISIAIEDGNNLQDAWEHILTCLSRIEHLQLLGEGAPPDASYLTPSNGETEEKALKSMGYPSLKKKGTLQNPAVMAIVRGGSYDST
TVGVNSPGLVTPEQINNFISNLNLLDQIGNFELNHVFANSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKIVEIAHYNMNRIRLVWSRIWNVLS
EFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSSSTEIRELIVRCISQMVLSRVSNVKSGWKSVFMVFTVAAADERKN
VVLLAFETMEKIVREYFPYITETETTTFTDCVRCLTTFTNSRFNSDVSLNAIAFLRFCALKLADGGLICNVKSSVDDPSIPIVDEVASDVNPSDKDVHVS
FWIPLLTGLSKLTSDPRSAIRKSALEVLFNILNDHGHLFSHSFWTTVFNSAIFPIFNSFSDMKDVKDQDSPTSAPPHSVGSAWDSETSTIAVQCLVYLFV
NFFNVVRSQLQSVVSILMGFIRSPVKGPASAGVAALLRLIGELGSRISEDEYREIFLSLKEAAASLLPGFMKVLRIMDGIEMPESSHPFADADVSSDHGF
TNDDLEDDNLQTAAYVVSRVKSHIAVQLLIVQVVSDLYKANQHLLSAANVRILIDIFSSIASHAHQLNSETDLLKKLLKACYIAEISDPPMVHFENESYE
KYLDFLRDLLDDNPSMSEALNVEAQLAAVCEKILLIYLNCTGLQTVQQDPANKPVIHWILPSGSAKKEELAARTSLLLSALRVLSGLESDSFRGYARQFF
PLLVDLVRCEHSSGEVQRILSDIFRSCIGPIIMG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G38200 SEC7-like guanine nucleotide e... Potri.004G208400 0 1
AT2G27900 unknown protein Potri.001G212600 1.00 0.9409
AT3G44200 IBO1, ATNEK6 "NIMA \(never in mitosis, gene... Potri.001G218100 1.41 0.9118
AT5G28350 Quinoprotein amine dehydrogena... Potri.014G087900 2.00 0.9103
AT1G49040 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE... Potri.012G060800 3.31 0.8956 SCD1.2
AT5G04930 ALA1 aminophospholipid ATPase 1 (.1... Potri.016G138000 4.35 0.8768
AT2G45540 WD-40 repeat family protein / ... Potri.002G150000 4.47 0.8988
AT2G46180 GC4 golgin candidate 4 (.1) Potri.014G091300 4.58 0.9006
AT1G49340 ATPI4K ALPHA, A... Phosphatidylinositol 3- and 4-... Potri.009G113700 4.89 0.9017 Pt-ALPHA.12
AT1G30450 HAP5, ATCCC1, C... HAPLESS 5, cation-chloride co-... Potri.001G357600 6.00 0.9103
AT3G04490 unknown protein Potri.019G019100 7.07 0.8718

Potri.004G208400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.