Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HMGR3.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76490 808 / 0 HMGR1, HMG1, AtHMGR1 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) AT2G17370 777 / 0 HMGR2, HMG2 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 2, 3-hydroxy-3-methylglutaryl-CoA reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169900 [exp] 1041 / 0 AT1G76490 815 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.001G457000 [exp] 853 / 0 AT1G76490 833 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.011G145000 [exp] 851 / 0 AT1G76490 845 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.002G004000 [exp] 835 / 0 AT1G76490 908 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.005G257000 [exp] 807 / 0 AT1G76490 817 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013850 [exp] 753 / 0 AT1G76490 740 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Lus10026567 [exp] 750 / 0 AT1G76490 737 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00368 [poplar] [flax] HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase
Representative CDS sequence Show only first row Show all	>Potri.004G208500.1 pacid=42794673 polypeptide=Potri.004G208500.1.p locus=Potri.004G208500 ID=Potri.004G208500.1.v4.1 annot-version=v4.1 ATGGAGGGGACTCGCCGGCGATCGACCAAATCCATTCATGATCACAAATTAGTTGATCACGACGAAAGCAGTGCAGTGATTGGCCCAAAAGCATCCGATG CATTACCCCTTCCTTTATATATAACCAATGCTCTCTTCTTCACCGTATTCTTTTCCGTTGTTTATTTCTTGCTTACTCGCTGGCGTGAGAAGATTCGCAA TTCCACTCCTCTTCATCTTCTCACTCTCTCTGAAATCGCTTCTATTTTTGCCTTTATTACATCTTTCATTTATATGCTTGGTTTCTTCGGCATCGACTTC GTTCAGTCCCTTATTCTCCGTCCTTCTCCTGATGTCTGGGCTGCCCACGATGACGAGGAAGATGAAGAAGATCTTCTCAAAGAAGATGCCTGTATAGTTC CCTGCGGACAGGCTCTTGATTGCACTGCACCACCACCGCAAAAACTCACTGTGGACCCGATTGTTGTTGTGCCTTCTCCTCCGCTCAAGCCCAAGGCGGT CGATGAAGTCCCATTTCCAACCACTTTAACTGAAGAAGATGAAGAAATTATCAACTCCGTGGTGGCTGGAAAAACTCCATCTTATTCACTCGAGTCTAAA TTGGGGGATTGCAAGCGTGCTGCGGCAATAAGGCGTGAGGCTTTGCAGAGGATTACTTCCAAGTCTTTGTCAGGGTTACCCCTGGAGGGTTTTGATTACG AGTCGATTTTGGGGCAGTGCTGTGAGATGCCAGTTGGGTACGTGCAGATTCCTGTAGGGATTGCTGGGCCTTTGTTGCTTGATGGGAAGGAGTACTCTGT TCCAATGGCTACAACTGAAGGGTGCTTGGTGGCTAGTACGAATAGGGGTTGTAAGGCAATTCATGTGTGTGGTGGTGCTACAAGTGTTTTGTTGAGGGAT GCCATGACAAGAGCACCTGTTGTGAGGTTTGGAACTGCTAAAAGAGCTGCTCAATTGAAGCTATACTTGGAGGATCCTGCTAATTTTGAGGCTGTGTCCA CGGCTTTTAACAAGTCTAGCAGATTTGGCAGGCTTCAGAATATTAAGTGTGCTCTCGCTGGAAAGAATCTTTACATGAGATTCTCCTGCAGCACTGGTGA TGCTATGGGCATGAACATGGTTTCTAAAGGTGTTCAGAATGTCTTGGACTTTGTCCAGAATGATTTCCCTGATATGGATGTTCTTGGCATCTCTGGAAAC TACTGTTCTGATAAGAAGCCTGCCGCTGTCAACTGGATTGAAGGAAGAGGCAAGTCAGTGGTGTGTGAGGCAATCATCAAGGGTGATGTGGTGAGGAAAG TCTTGAAGACTAACGTGAATACCTTGGTGGAACTTAATATGCTCAAGAACCTTACTGGTTCTGCCATGGCTGGAGCTCTCGGAGGCTTCAACGCTCATGC CAGTAACATTGTTTCTGCTATCTATATTGCCACTGGCCAAGATCCTGCACAGAACGTGGAGAGTTCTCACTGCATTACTATGATGGAACCTCTTAACGGC GGAGAGGATCTTCATGTCTCAGTCACTATGCCTTCCATTGAGGTTGGTACTGTTGGAGGAGGTACCCAGCTTGCATCTCAATCAGCATGCTTGAACCTGC TCGGAGTGAAGGGTGCTTGCAAAGAGACACCTGGAGCCAACGCAAGGCTGCTAGCCAGCATTGTAGCTGGTTCTGTTCTTGCTGGAGAGCTTTCCCTCAT GTCCGCTATTGCAGCTGGACAACTTGTCCAAAGCCACATGCAATATAACCGGGCAAACAAGGATGTTGCCAAGGTTTCTTCATAA
AA sequence Show only first row Show all	>Potri.004G208500.1 pacid=42794673 polypeptide=Potri.004G208500.1.p locus=Potri.004G208500 ID=Potri.004G208500.1.v4.1 annot-version=v4.1 MEGTRRRSTKSIHDHKLVDHDESSAVIGPKASDALPLPLYITNALFFTVFFSVVYFLLTRWREKIRNSTPLHLLTLSEIASIFAFITSFIYMLGFFGIDF VQSLILRPSPDVWAAHDDEEDEEDLLKEDACIVPCGQALDCTAPPPQKLTVDPIVVVPSPPLKPKAVDEVPFPTTLTEEDEEIINSVVAGKTPSYSLESK LGDCKRAAAIRREALQRITSKSLSGLPLEGFDYESILGQCCEMPVGYVQIPVGIAGPLLLDGKEYSVPMATTEGCLVASTNRGCKAIHVCGGATSVLLRD AMTRAPVVRFGTAKRAAQLKLYLEDPANFEAVSTAFNKSSRFGRLQNIKCALAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDFVQNDFPDMDVLGISGN YCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVNTLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEPLNG GEDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGACKETPGANARLLASIVAGSVLAGELSLMSAIAAGQLVQSHMQYNRANKDVAKVSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.004G208500 [exp]	0	1	HMGR3.4
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.010G041800 [exp]	1.00	0.9620
					Potri.002G101600 [exp]	3.16	0.9510
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.002G155300 [exp]	3.46	0.9516	BAP2.1
AT5G12340			unknown protein		Potri.009G071100 [exp]	4.24	0.9564
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.014G100900 [exp]	4.24	0.9455	DAG1.2
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.003G165000 [exp]	4.24	0.9584
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.019G013300 [exp]	6.00	0.9415
AT2G32300		UCC1	uclacyanin 1 (.1)		Potri.018G129200 [exp]	6.70	0.9395
AT2G47485			unknown protein		Potri.004G095150 [exp]	7.48	0.9469
AT2G47485			unknown protein		Potri.004G095200 [exp]	8.48	0.9460

Compare expression of checked genes

Potri.004G208500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.